Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0508 and Shew_0509 are separated by 265 nucleotides Shew_0509 and Shew_0510 are separated by 52 nucleotides Shew_0510 and Shew_0511 are separated by 9 nucleotides
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Shew_0509: Shew_0509 - hypothetical protein (RefSeq), at 568,204 to 568,629
_0509
Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120
_0510
Shew_0511: Shew_0511 - HlyD family type I secretion membrane fusion protein (RefSeq), at 577,130 to 578,455
_0511
Position (kb) 568
569
570
571
572
573
574
575
576
577
578 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 567.774 kb on - strand, within Shew_0508 at 568.067 kb on + strand at 568.440 kb on - strand, within Shew_0509 at 568.442 kb on + strand, within Shew_0509 at 568.871 kb on - strand at 569.139 kb on + strand at 569.185 kb on + strand at 569.335 kb on + strand at 569.646 kb on + strand, within Shew_0510 at 569.699 kb on - strand, within Shew_0510 at 569.771 kb on - strand, within Shew_0510 at 569.813 kb on + strand, within Shew_0510 at 569.933 kb on + strand, within Shew_0510 at 569.980 kb on + strand, within Shew_0510 at 569.990 kb on + strand, within Shew_0510 at 570.124 kb on + strand, within Shew_0510 at 570.170 kb on - strand, within Shew_0510 at 570.492 kb on - strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.540 kb on - strand, within Shew_0510 at 570.819 kb on + strand, within Shew_0510 at 570.880 kb on - strand, within Shew_0510 at 570.962 kb on - strand, within Shew_0510 at 570.967 kb on - strand, within Shew_0510 at 571.165 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.192 kb on + strand, within Shew_0510 at 571.235 kb on + strand, within Shew_0510 at 571.236 kb on - strand, within Shew_0510 at 571.291 kb on + strand, within Shew_0510 at 571.349 kb on + strand, within Shew_0510 at 571.357 kb on - strand, within Shew_0510 at 571.357 kb on + strand, within Shew_0510 at 571.391 kb on + strand, within Shew_0510 at 571.423 kb on + strand, within Shew_0510 at 571.537 kb on - strand, within Shew_0510 at 571.648 kb on + strand, within Shew_0510 at 571.648 kb on - strand, within Shew_0510 at 571.716 kb on + strand, within Shew_0510 at 571.933 kb on + strand, within Shew_0510 at 572.015 kb on - strand, within Shew_0510 at 572.129 kb on - strand, within Shew_0510 at 572.141 kb on - strand, within Shew_0510 at 572.235 kb on - strand, within Shew_0510 at 572.466 kb on + strand, within Shew_0510 at 572.478 kb on + strand, within Shew_0510 at 573.219 kb on + strand, within Shew_0510 at 573.223 kb on + strand, within Shew_0510 at 573.389 kb on + strand, within Shew_0510 at 574.180 kb on - strand, within Shew_0510 at 574.180 kb on - strand, within Shew_0510 at 574.503 kb on - strand, within Shew_0510 at 574.636 kb on - strand, within Shew_0510 at 574.643 kb on - strand, within Shew_0510 at 574.813 kb on + strand, within Shew_0510 at 574.813 kb on + strand, within Shew_0510 at 574.820 kb on + strand, within Shew_0510 at 574.821 kb on - strand, within Shew_0510 at 574.821 kb on - strand, within Shew_0510 at 575.030 kb on - strand, within Shew_0510 at 575.184 kb on - strand, within Shew_0510 at 575.184 kb on - strand, within Shew_0510 at 575.359 kb on + strand, within Shew_0510 at 575.458 kb on + strand, within Shew_0510 at 575.614 kb on + strand, within Shew_0510 at 575.716 kb on + strand, within Shew_0510 at 575.965 kb on - strand, within Shew_0510 at 576.354 kb on + strand at 576.362 kb on - strand at 576.529 kb on + strand at 576.569 kb on - strand at 576.592 kb on - strand at 576.802 kb on - strand at 576.825 kb on - strand at 576.951 kb on + strand at 576.959 kb on - strand at 577.406 kb on - strand, within Shew_0511 at 577.453 kb on + strand, within Shew_0511 at 577.546 kb on - strand, within Shew_0511 at 577.634 kb on - strand, within Shew_0511 at 577.896 kb on + strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 578.103 kb on + strand, within Shew_0511
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 567,774 - Shew_0508 0.86 +0.4 568,067 + +0.0 568,440 - Shew_0509 0.55 +0.5 568,442 + Shew_0509 0.56 +1.4 568,871 - +0.4 569,139 + -0.4 569,185 + +0.8 569,335 + +0.2 569,646 + Shew_0510 0.11 -0.2 569,699 - Shew_0510 0.12 -1.7 569,771 - Shew_0510 0.13 +0.3 569,813 + Shew_0510 0.13 -2.5 569,933 + Shew_0510 0.15 -0.6 569,980 + Shew_0510 0.15 +0.1 569,990 + Shew_0510 0.15 -1.0 570,124 + Shew_0510 0.17 +0.1 570,170 - Shew_0510 0.18 -0.1 570,492 - Shew_0510 0.21 +0.3 570,504 + Shew_0510 0.22 -0.2 570,504 + Shew_0510 0.22 -0.1 570,504 + Shew_0510 0.22 +2.1 570,540 - Shew_0510 0.22 +0.1 570,819 + Shew_0510 0.25 +0.8 570,880 - Shew_0510 0.26 -0.7 570,962 - Shew_0510 0.27 +0.1 570,967 - Shew_0510 0.27 -0.1 571,165 - Shew_0510 0.29 -4.2 571,170 - Shew_0510 0.29 +0.1 571,170 - Shew_0510 0.29 +1.1 571,170 - Shew_0510 0.29 -0.4 571,192 + Shew_0510 0.30 +0.4 571,235 + Shew_0510 0.30 -0.8 571,236 - Shew_0510 0.30 +0.0 571,291 + Shew_0510 0.31 -4.9 571,349 + Shew_0510 0.32 -1.8 571,357 - Shew_0510 0.32 -0.1 571,357 + Shew_0510 0.32 -0.3 571,391 + Shew_0510 0.32 -1.6 571,423 + Shew_0510 0.32 -0.2 571,537 - Shew_0510 0.34 +0.7 571,648 + Shew_0510 0.35 +0.3 571,648 - Shew_0510 0.35 +2.1 571,716 + Shew_0510 0.36 -0.9 571,933 + Shew_0510 0.39 -0.8 572,015 - Shew_0510 0.39 -0.2 572,129 - Shew_0510 0.41 +0.4 572,141 - Shew_0510 0.41 -1.1 572,235 - Shew_0510 0.42 -0.7 572,466 + Shew_0510 0.45 +1.2 572,478 + Shew_0510 0.45 +0.5 573,219 + Shew_0510 0.54 +0.1 573,223 + Shew_0510 0.54 -0.6 573,389 + Shew_0510 0.56 +0.1 574,180 - Shew_0510 0.65 -3.8 574,180 - Shew_0510 0.65 +0.5 574,503 - Shew_0510 0.69 -1.6 574,636 - Shew_0510 0.71 -0.2 574,643 - Shew_0510 0.71 -2.2 574,813 + Shew_0510 0.73 -2.2 574,813 + Shew_0510 0.73 -1.3 574,820 + Shew_0510 0.73 +0.1 574,821 - Shew_0510 0.73 -3.2 574,821 - Shew_0510 0.73 -0.9 575,030 - Shew_0510 0.75 -0.7 575,184 - Shew_0510 0.77 -0.4 575,184 - Shew_0510 0.77 +1.5 575,359 + Shew_0510 0.79 -1.3 575,458 + Shew_0510 0.80 -0.7 575,614 + Shew_0510 0.82 +0.6 575,716 + Shew_0510 0.83 +0.7 575,965 - Shew_0510 0.86 -0.2 576,354 + +0.3 576,362 - -0.1 576,529 + +0.7 576,569 - +0.3 576,592 - -1.2 576,802 - -1.1 576,825 - +1.9 576,951 + +0.3 576,959 - +0.3 577,406 - Shew_0511 0.21 +1.1 577,453 + Shew_0511 0.24 +0.6 577,546 - Shew_0511 0.31 +3.1 577,634 - Shew_0511 0.38 +0.2 577,896 + Shew_0511 0.58 +0.5 577,919 - Shew_0511 0.60 -2.2 577,919 - Shew_0511 0.60 -3.0 578,103 + Shew_0511 0.73 -1.3
Or see this region's nucleotide sequence