Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0407 and Shew_0408 overlap by 1 nucleotides Shew_0408 and Shew_0409 overlap by 77 nucleotides Shew_0409 and Shew_0410 are separated by 41 nucleotides
Shew_0407: Shew_0407 - ribonuclease G (RefSeq), at 456,232 to 457,734
_0407
Shew_0408: Shew_0408 - hypothetical protein (RefSeq), at 457,734 to 462,044
_0408
Shew_0409: Shew_0409 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq), at 461,968 to 462,798
_0409
Shew_0410: Shew_0410 - peptidase U62, modulator of DNA gyrase (RefSeq), at 462,840 to 464,288
_0410
Position (kb) 457
458
459
460
461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 456.840 kb on + strand, within Shew_0407 at 457.184 kb on - strand, within Shew_0407 at 457.203 kb on + strand, within Shew_0407 at 457.219 kb on + strand, within Shew_0407 at 457.834 kb on - strand at 457.834 kb on - strand at 458.047 kb on + strand at 458.232 kb on + strand, within Shew_0408 at 458.427 kb on + strand, within Shew_0408 at 458.427 kb on + strand, within Shew_0408 at 458.548 kb on - strand, within Shew_0408 at 458.732 kb on - strand, within Shew_0408 at 458.898 kb on - strand, within Shew_0408 at 458.898 kb on - strand, within Shew_0408 at 458.898 kb on - strand, within Shew_0408 at 458.937 kb on - strand, within Shew_0408 at 459.157 kb on + strand, within Shew_0408 at 459.289 kb on - strand, within Shew_0408 at 459.678 kb on + strand, within Shew_0408 at 459.733 kb on - strand, within Shew_0408 at 459.819 kb on + strand, within Shew_0408 at 460.268 kb on + strand, within Shew_0408 at 460.344 kb on - strand, within Shew_0408 at 460.474 kb on - strand, within Shew_0408 at 460.791 kb on - strand, within Shew_0408 at 460.958 kb on + strand, within Shew_0408 at 460.966 kb on - strand, within Shew_0408 at 461.314 kb on + strand, within Shew_0408 at 461.322 kb on - strand, within Shew_0408 at 461.322 kb on - strand, within Shew_0408 at 461.332 kb on - strand, within Shew_0408 at 461.345 kb on - strand, within Shew_0408 at 461.576 kb on + strand, within Shew_0408 at 461.685 kb on + strand at 461.769 kb on + strand at 462.097 kb on - strand, within Shew_0409 at 462.391 kb on - strand, within Shew_0409 at 462.431 kb on + strand, within Shew_0409 at 462.446 kb on - strand, within Shew_0409 at 462.615 kb on + strand, within Shew_0409 at 462.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 456,840 + Shew_0407 0.40 +1.3 457,184 - Shew_0407 0.63 -2.9 457,203 + Shew_0407 0.65 +1.2 457,219 + Shew_0407 0.66 +3.0 457,834 - -0.8 457,834 - -3.7 458,047 + +0.2 458,232 + Shew_0408 0.12 -2.2 458,427 + Shew_0408 0.16 +0.3 458,427 + Shew_0408 0.16 -0.8 458,548 - Shew_0408 0.19 -0.9 458,732 - Shew_0408 0.23 +0.7 458,898 - Shew_0408 0.27 +2.2 458,898 - Shew_0408 0.27 +1.1 458,898 - Shew_0408 0.27 +0.2 458,937 - Shew_0408 0.28 -0.2 459,157 + Shew_0408 0.33 +0.5 459,289 - Shew_0408 0.36 +0.2 459,678 + Shew_0408 0.45 +1.1 459,733 - Shew_0408 0.46 +0.2 459,819 + Shew_0408 0.48 +0.1 460,268 + Shew_0408 0.59 +0.3 460,344 - Shew_0408 0.61 -1.9 460,474 - Shew_0408 0.64 +0.4 460,791 - Shew_0408 0.71 -0.4 460,958 + Shew_0408 0.75 +0.6 460,966 - Shew_0408 0.75 -0.9 461,314 + Shew_0408 0.83 -1.0 461,322 - Shew_0408 0.83 -0.2 461,322 - Shew_0408 0.83 -0.7 461,332 - Shew_0408 0.83 +0.7 461,345 - Shew_0408 0.84 +0.2 461,576 + Shew_0408 0.89 -0.1 461,685 + -0.0 461,769 + -0.4 462,097 - Shew_0409 0.16 -0.7 462,391 - Shew_0409 0.51 -0.8 462,431 + Shew_0409 0.56 +1.4 462,446 - Shew_0409 0.58 -1.2 462,615 + Shew_0409 0.78 -2.7 462,717 + -2.0
Or see this region's nucleotide sequence