Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0344 and Shew_0345 are separated by 125 nucleotides Shew_0345 and Shew_0346 overlap by 4 nucleotides Shew_0346 and Shew_0347 are separated by 2 nucleotides
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Shew_0347: Shew_0347 - cytochrome c assembly protein (RefSeq), at 394,380 to 396,371
_0347
Position (kb) 393
394 Strain fitness (log2 ratio) -1
0
1
2 at 392.303 kb on + strand, within Shew_0344 at 392.318 kb on - strand, within Shew_0344 at 392.543 kb on + strand, within Shew_0344 at 392.713 kb on - strand, within Shew_0344 at 392.747 kb on - strand, within Shew_0344 at 392.957 kb on - strand, within Shew_0344 at 393.073 kb on + strand at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346 at 394.217 kb on - strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.232 kb on - strand, within Shew_0346 at 394.618 kb on + strand, within Shew_0347
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 392,303 + Shew_0344 0.43 -0.3 392,318 - Shew_0344 0.44 -0.5 392,543 + Shew_0344 0.59 -0.3 392,713 - Shew_0344 0.70 +2.1 392,747 - Shew_0344 0.72 +0.4 392,957 - Shew_0344 0.86 -1.0 393,073 + -0.1 393,453 - Shew_0345 0.24 +0.2 393,486 + Shew_0345 0.29 -1.0 393,789 + Shew_0345 0.77 -0.9 393,896 - +0.5 394,129 - Shew_0346 0.44 -1.0 394,217 - Shew_0346 0.64 -0.5 394,224 + Shew_0346 0.66 -0.0 394,224 + Shew_0346 0.66 +0.3 394,224 + Shew_0346 0.66 -0.1 394,232 - Shew_0346 0.67 -0.1 394,618 + Shew_0347 0.12 -0.8
Or see this region's nucleotide sequence