Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0312 and Shew_0313 are separated by 134 nucleotides Shew_0313 and Shew_0314 are separated by 116 nucleotides
Shew_0312: Shew_0312 - ABC transporter-related protein (RefSeq), at 338,680 to 340,860
_0312
Shew_0313: Shew_0313 - putative outer membrane adhesin like proteiin (RefSeq), at 340,995 to 355,505
_0313
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Position (kb) 340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 340.307 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.487 kb on - strand, within Shew_0312 at 340.770 kb on + strand at 340.811 kb on - strand at 340.868 kb on - strand at 340.977 kb on + strand at 341.098 kb on + strand at 341.397 kb on + strand at 341.422 kb on - strand at 341.603 kb on + strand at 341.716 kb on + strand at 341.902 kb on - strand at 341.949 kb on - strand at 341.972 kb on - strand at 341.999 kb on + strand at 342.031 kb on - strand at 342.829 kb on - strand, within Shew_0313 at 342.889 kb on + strand, within Shew_0313 at 343.091 kb on - strand, within Shew_0313 at 343.198 kb on - strand, within Shew_0313 at 343.538 kb on + strand, within Shew_0313 at 344.054 kb on - strand, within Shew_0313 at 344.335 kb on - strand, within Shew_0313 at 344.346 kb on + strand, within Shew_0313 at 344.352 kb on + strand, within Shew_0313 at 344.354 kb on - strand, within Shew_0313 at 344.354 kb on + strand, within Shew_0313 at 344.599 kb on + strand, within Shew_0313 at 345.476 kb on + strand, within Shew_0313 at 345.802 kb on - strand, within Shew_0313 at 345.971 kb on - strand, within Shew_0313 at 352.260 kb on + strand, within Shew_0313 at 352.339 kb on - strand, within Shew_0313 at 352.485 kb on - strand, within Shew_0313 at 352.538 kb on - strand, within Shew_0313 at 354.046 kb on - strand, within Shew_0313 at 354.097 kb on - strand at 354.216 kb on + strand at 354.239 kb on + strand at 354.285 kb on - strand at 355.054 kb on - strand at 355.072 kb on + strand at 355.827 kb on - strand at 355.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 340,307 + Shew_0312 0.75 -0.3 340,479 + Shew_0312 0.82 -2.6 340,479 + Shew_0312 0.82 -1.1 340,487 - Shew_0312 0.83 -1.6 340,770 + -1.0 340,811 - -3.9 340,868 - -1.0 340,977 + -1.4 341,098 + -1.7 341,397 + -0.5 341,422 - -1.3 341,603 + -1.7 341,716 + -2.1 341,902 - -1.2 341,949 - +0.1 341,972 - -1.3 341,999 + -1.0 342,031 - -0.5 342,829 - Shew_0313 0.13 -2.8 342,889 + Shew_0313 0.13 -1.7 343,091 - Shew_0313 0.14 -2.6 343,198 - Shew_0313 0.15 +0.2 343,538 + Shew_0313 0.18 -0.9 344,054 - Shew_0313 0.21 +0.9 344,335 - Shew_0313 0.23 -1.2 344,346 + Shew_0313 0.23 -1.3 344,352 + Shew_0313 0.23 -0.5 344,354 - Shew_0313 0.23 -1.6 344,354 + Shew_0313 0.23 +0.5 344,599 + Shew_0313 0.25 -1.6 345,476 + Shew_0313 0.31 -2.6 345,802 - Shew_0313 0.33 -1.3 345,971 - Shew_0313 0.34 -1.4 352,260 + Shew_0313 0.78 -2.8 352,339 - Shew_0313 0.78 -1.8 352,485 - Shew_0313 0.79 -2.3 352,538 - Shew_0313 0.80 -1.6 354,046 - Shew_0313 0.90 -1.7 354,097 - -2.3 354,216 + +1.6 354,239 + -1.5 354,285 - -1.8 355,054 - +0.9 355,072 + -2.9 355,827 - +0.6 355,952 + +0.1
Or see this region's nucleotide sequence