Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0238 and Shew_0239 are separated by 138 nucleotides Shew_0239 and Shew_0240 are separated by 64 nucleotides Shew_0240 and Shew_0241 overlap by 1 nucleotides
Shew_0238: Shew_0238 - porin (RefSeq), at 254,419 to 255,507
_0238
Shew_0239: Shew_0239 - formate dehydrogenase, gamma subunit (RefSeq), at 255,646 to 256,626
_0239
Shew_0240: Shew_0240 - cytoplasmic chaperone TorD family protein (RefSeq), at 256,691 to 257,305
_0240
Shew_0241: Shew_0241 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 257,305 to 257,850
_0241
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 254.661 kb on - strand, within Shew_0238 at 254.778 kb on - strand, within Shew_0238 at 254.782 kb on + strand, within Shew_0238 at 254.825 kb on - strand, within Shew_0238 at 254.859 kb on + strand, within Shew_0238 at 254.869 kb on + strand, within Shew_0238 at 255.431 kb on + strand at 255.436 kb on + strand at 255.581 kb on - strand at 255.727 kb on + strand at 255.791 kb on + strand, within Shew_0239 at 255.905 kb on + strand, within Shew_0239 at 255.924 kb on + strand, within Shew_0239 at 256.098 kb on - strand, within Shew_0239 at 256.169 kb on + strand, within Shew_0239 at 256.379 kb on - strand, within Shew_0239 at 256.563 kb on + strand at 256.571 kb on - strand at 257.060 kb on + strand, within Shew_0240 at 257.281 kb on + strand at 257.567 kb on - strand, within Shew_0241 at 257.567 kb on - strand, within Shew_0241 at 257.584 kb on + strand, within Shew_0241
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 254,661 - Shew_0238 0.22 -0.4 254,778 - Shew_0238 0.33 -1.4 254,782 + Shew_0238 0.33 +0.2 254,825 - Shew_0238 0.37 +1.6 254,859 + Shew_0238 0.40 +0.1 254,869 + Shew_0238 0.41 -3.3 255,431 + -0.0 255,436 + -0.4 255,581 - -0.1 255,727 + +0.0 255,791 + Shew_0239 0.15 -0.2 255,905 + Shew_0239 0.26 +1.7 255,924 + Shew_0239 0.28 +0.5 256,098 - Shew_0239 0.46 +0.1 256,169 + Shew_0239 0.53 +0.8 256,379 - Shew_0239 0.75 +0.4 256,563 + -1.5 256,571 - -0.0 257,060 + Shew_0240 0.60 -0.6 257,281 + -0.8 257,567 - Shew_0241 0.48 -0.7 257,567 - Shew_0241 0.48 -0.2 257,584 + Shew_0241 0.51 -1.3
Or see this region's nucleotide sequence