Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0113 and Shew_0114 are separated by 21 nucleotides Shew_0114 and Shew_0115 overlap by 4 nucleotides Shew_0115 and Shew_0116 are separated by 163 nucleotides Shew_0116 and Shew_0117 are separated by 4 nucleotides Shew_0117 and Shew_0118 are separated by 12 nucleotides
Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896
_0113
Shew_0114: Shew_0114 - response regulator receiver protein (RefSeq), at 126,918 to 127,280
_0114
Shew_0115: Shew_0115 - hypothetical protein (RefSeq), at 127,277 to 127,576
_0115
Shew_0116: Shew_0116 - electron transport protein SCO1/SenC (RefSeq), at 127,740 to 128,375
_0116
Shew_0117: Shew_0117 - protoheme IX farnesyltransferase (RefSeq), at 128,380 to 129,282
_0117
Shew_0118: Shew_0118 - cytochrome oxidase assembly (RefSeq), at 129,295 to 130,278
_0118
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.842 kb on + strand at 126.921 kb on + strand at 126.921 kb on + strand at 126.974 kb on - strand, within Shew_0114 at 127.124 kb on + strand, within Shew_0114 at 127.207 kb on - strand, within Shew_0114 at 127.228 kb on - strand, within Shew_0114 at 127.350 kb on - strand, within Shew_0115 at 127.817 kb on + strand, within Shew_0116 at 127.874 kb on - strand, within Shew_0116 at 127.933 kb on + strand, within Shew_0116 at 128.238 kb on + strand, within Shew_0116 at 128.260 kb on - strand, within Shew_0116 at 128.324 kb on + strand at 128.349 kb on + strand at 128.526 kb on - strand, within Shew_0117 at 128.534 kb on - strand, within Shew_0117 at 128.568 kb on + strand, within Shew_0117 at 128.568 kb on + strand, within Shew_0117 at 128.571 kb on - strand, within Shew_0117 at 128.573 kb on + strand, within Shew_0117 at 128.573 kb on + strand, within Shew_0117 at 128.573 kb on + strand, within Shew_0117 at 128.576 kb on - strand, within Shew_0117 at 128.576 kb on - strand, within Shew_0117 at 128.576 kb on - strand, within Shew_0117 at 128.581 kb on - strand, within Shew_0117 at 128.581 kb on - strand, within Shew_0117 at 128.581 kb on - strand, within Shew_0117 at 128.581 kb on - strand, within Shew_0117 at 128.603 kb on + strand, within Shew_0117 at 128.904 kb on - strand, within Shew_0117 at 128.930 kb on + strand, within Shew_0117 at 128.943 kb on + strand, within Shew_0117 at 129.133 kb on + strand, within Shew_0117 at 129.209 kb on - strand at 129.254 kb on + strand at 129.312 kb on + strand at 129.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 126,842 + +1.7 126,921 + -0.1 126,921 + +1.9 126,974 - Shew_0114 0.15 +2.2 127,124 + Shew_0114 0.57 +0.1 127,207 - Shew_0114 0.80 +0.3 127,228 - Shew_0114 0.85 -0.5 127,350 - Shew_0115 0.24 -2.4 127,817 + Shew_0116 0.12 +0.2 127,874 - Shew_0116 0.21 -2.1 127,933 + Shew_0116 0.30 -0.1 128,238 + Shew_0116 0.78 -1.0 128,260 - Shew_0116 0.82 -2.2 128,324 + +0.7 128,349 + +1.5 128,526 - Shew_0117 0.16 -1.0 128,534 - Shew_0117 0.17 -1.1 128,568 + Shew_0117 0.21 -0.1 128,568 + Shew_0117 0.21 -0.3 128,571 - Shew_0117 0.21 -1.3 128,573 + Shew_0117 0.21 +0.0 128,573 + Shew_0117 0.21 -0.8 128,573 + Shew_0117 0.21 -0.0 128,576 - Shew_0117 0.22 +1.2 128,576 - Shew_0117 0.22 -0.7 128,576 - Shew_0117 0.22 -1.4 128,581 - Shew_0117 0.22 -2.7 128,581 - Shew_0117 0.22 -0.1 128,581 - Shew_0117 0.22 -1.3 128,581 - Shew_0117 0.22 -0.0 128,603 + Shew_0117 0.25 -0.7 128,904 - Shew_0117 0.58 -0.4 128,930 + Shew_0117 0.61 -1.6 128,943 + Shew_0117 0.62 -1.1 129,133 + Shew_0117 0.83 -0.4 129,209 - -0.5 129,254 + +0.2 129,312 + -1.8 129,335 - -0.5
Or see this region's nucleotide sequence