Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0080 and Shew_0081 are separated by 6 nucleotides Shew_0081 and Shew_0082 are separated by 52 nucleotides Shew_0082 and Shew_0083 are separated by 134 nucleotides
Shew_0080: Shew_0080 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 93,574 to 94,866
_0080
Shew_0081: Shew_0081 - two component transcriptional regulator (RefSeq), at 94,873 to 95,607
_0081
Shew_0082: Shew_0082 - hypothetical protein (RefSeq), at 95,660 to 96,109
_0082
Shew_0083: Shew_0083 - MOSC domain-containing protein (RefSeq), at 96,244 to 96,936
_0083
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.955 kb on - strand, within Shew_0080 at 94.003 kb on - strand, within Shew_0080 at 94.014 kb on - strand, within Shew_0080 at 94.054 kb on + strand, within Shew_0080 at 94.145 kb on - strand, within Shew_0080 at 94.160 kb on + strand, within Shew_0080 at 94.168 kb on - strand, within Shew_0080 at 94.283 kb on - strand, within Shew_0080 at 94.517 kb on - strand, within Shew_0080 at 94.517 kb on - strand, within Shew_0080 at 94.694 kb on + strand, within Shew_0080 at 94.785 kb on + strand at 94.802 kb on - strand at 94.843 kb on - strand at 95.002 kb on + strand, within Shew_0081 at 95.439 kb on + strand, within Shew_0081 at 95.887 kb on + strand, within Shew_0082 at 95.890 kb on - strand, within Shew_0082 at 95.948 kb on - strand, within Shew_0082 at 96.087 kb on - strand at 96.187 kb on - strand at 96.371 kb on - strand, within Shew_0083
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 93,955 - Shew_0080 0.29 -0.1 94,003 - Shew_0080 0.33 +2.0 94,014 - Shew_0080 0.34 -1.3 94,054 + Shew_0080 0.37 -0.1 94,145 - Shew_0080 0.44 -0.0 94,160 + Shew_0080 0.45 +0.3 94,168 - Shew_0080 0.46 +1.5 94,283 - Shew_0080 0.55 -0.2 94,517 - Shew_0080 0.73 -3.4 94,517 - Shew_0080 0.73 -0.2 94,694 + Shew_0080 0.87 +0.3 94,785 + +0.0 94,802 - +0.2 94,843 - +0.1 95,002 + Shew_0081 0.18 -0.9 95,439 + Shew_0081 0.77 +1.1 95,887 + Shew_0082 0.50 +0.0 95,890 - Shew_0082 0.51 +0.0 95,948 - Shew_0082 0.64 +0.4 96,087 - -0.4 96,187 - -0.9 96,371 - Shew_0083 0.18 -0.4
Or see this region's nucleotide sequence