Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0053 and Shew_0054 are separated by 295 nucleotides Shew_0054 and Shew_0055 overlap by 1 nucleotides Shew_0055 and Shew_0056 are separated by 181 nucleotides
Shew_0053: Shew_0053 - formate dehydrogenase, subunit FdhD (RefSeq), at 64,717 to 65,562
_0053
Shew_0054: Shew_0054 - hypothetical protein (RefSeq), at 65,858 to 66,328
_0054
Shew_0055: Shew_0055 - hypothetical protein (RefSeq), at 66,328 to 66,918
_0055
Shew_0056: Shew_0056 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 67,100 to 68,776
_0056
Position (kb) 66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.394 kb on + strand, within Shew_0053 at 65.528 kb on + strand at 65.536 kb on - strand at 65.594 kb on + strand at 65.720 kb on - strand at 65.991 kb on + strand, within Shew_0054 at 66.021 kb on - strand, within Shew_0054 at 66.063 kb on - strand, within Shew_0054 at 66.178 kb on - strand, within Shew_0054 at 66.258 kb on + strand, within Shew_0054 at 66.291 kb on - strand at 66.362 kb on + strand at 66.486 kb on + strand, within Shew_0055 at 66.545 kb on + strand, within Shew_0055 at 66.553 kb on - strand, within Shew_0055 at 66.615 kb on + strand, within Shew_0055 at 66.621 kb on - strand, within Shew_0055 at 66.673 kb on + strand, within Shew_0055 at 66.678 kb on + strand, within Shew_0055 at 66.683 kb on + strand, within Shew_0055 at 66.686 kb on - strand, within Shew_0055 at 67.030 kb on - strand at 67.207 kb on + strand at 67.269 kb on - strand, within Shew_0056 at 67.284 kb on + strand, within Shew_0056 at 67.715 kb on - strand, within Shew_0056 at 67.824 kb on + strand, within Shew_0056 at 67.832 kb on - strand, within Shew_0056 at 67.832 kb on - strand, within Shew_0056
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 65,394 + Shew_0053 0.80 -3.9 65,528 + -0.6 65,536 - -3.4 65,594 + +0.0 65,720 - +0.3 65,991 + Shew_0054 0.28 -0.5 66,021 - Shew_0054 0.35 +0.1 66,063 - Shew_0054 0.44 +0.5 66,178 - Shew_0054 0.68 -0.4 66,258 + Shew_0054 0.85 +0.1 66,291 - -1.7 66,362 + -0.4 66,486 + Shew_0055 0.27 -0.7 66,545 + Shew_0055 0.37 -0.3 66,553 - Shew_0055 0.38 -1.1 66,615 + Shew_0055 0.49 -0.9 66,621 - Shew_0055 0.50 +0.6 66,673 + Shew_0055 0.58 -1.6 66,678 + Shew_0055 0.59 -1.1 66,683 + Shew_0055 0.60 -0.3 66,686 - Shew_0055 0.61 -0.7 67,030 - -1.0 67,207 + -1.5 67,269 - Shew_0056 0.10 -0.8 67,284 + Shew_0056 0.11 -0.5 67,715 - Shew_0056 0.37 -2.4 67,824 + Shew_0056 0.43 -1.5 67,832 - Shew_0056 0.44 -1.5 67,832 - Shew_0056 0.44 +2.2
Or see this region's nucleotide sequence