Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0049 and Shew_0050 are separated by 103 nucleotides Shew_0050 and Shew_0051 are separated by 7 nucleotides Shew_0051 and Shew_0052 are separated by 95 nucleotides
Shew_0049: Shew_0049 - choline/carnitine/betaine transporter (RefSeq), at 59,401 to 60,972
_0049
Shew_0050: Shew_0050 - DNA polymerase III subunit epsilon (RefSeq), at 61,076 to 61,795
_0050
Shew_0051: Shew_0051 - cyclic nucleotide-binding protein (RefSeq), at 61,803 to 63,692
_0051
Shew_0052: Shew_0052 - DNA binding domain-containing protein (RefSeq), at 63,788 to 64,693
_0052
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 60.950 kb on - strand at 60.950 kb on - strand at 61.064 kb on - strand at 61.187 kb on + strand, within Shew_0050 at 61.198 kb on - strand, within Shew_0050 at 61.204 kb on - strand, within Shew_0050 at 61.308 kb on + strand, within Shew_0050 at 61.473 kb on - strand, within Shew_0050 at 61.513 kb on + strand, within Shew_0050 at 61.572 kb on + strand, within Shew_0050 at 61.599 kb on + strand, within Shew_0050 at 61.616 kb on + strand, within Shew_0050 at 61.616 kb on + strand, within Shew_0050 at 61.736 kb on - strand at 61.812 kb on - strand at 61.921 kb on + strand at 62.300 kb on + strand, within Shew_0051 at 62.300 kb on + strand, within Shew_0051 at 62.574 kb on + strand, within Shew_0051 at 62.695 kb on - strand, within Shew_0051 at 62.769 kb on + strand, within Shew_0051 at 62.778 kb on - strand, within Shew_0051 at 62.778 kb on - strand, within Shew_0051 at 62.993 kb on + strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.141 kb on - strand, within Shew_0051 at 63.293 kb on + strand, within Shew_0051 at 63.301 kb on - strand, within Shew_0051 at 63.301 kb on - strand, within Shew_0051 at 63.303 kb on + strand, within Shew_0051 at 63.333 kb on + strand, within Shew_0051 at 63.426 kb on - strand, within Shew_0051 at 63.474 kb on + strand, within Shew_0051 at 63.474 kb on + strand, within Shew_0051 at 63.526 kb on + strand at 63.806 kb on - strand at 63.834 kb on + strand at 63.836 kb on + strand at 64.081 kb on + strand, within Shew_0052 at 64.089 kb on - strand, within Shew_0052 at 64.089 kb on - strand, within Shew_0052 at 64.094 kb on - strand, within Shew_0052 at 64.284 kb on + strand, within Shew_0052 at 64.292 kb on - strand, within Shew_0052 at 64.292 kb on - strand, within Shew_0052 at 64.326 kb on + strand, within Shew_0052 at 64.334 kb on + strand, within Shew_0052 at 64.611 kb on + strand at 64.619 kb on - strand at 64.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 60,950 - +0.8 60,950 - -0.7 61,064 - -0.4 61,187 + Shew_0050 0.15 +2.1 61,198 - Shew_0050 0.17 +0.7 61,204 - Shew_0050 0.18 -0.6 61,308 + Shew_0050 0.32 +0.2 61,473 - Shew_0050 0.55 -0.7 61,513 + Shew_0050 0.61 -1.4 61,572 + Shew_0050 0.69 -0.5 61,599 + Shew_0050 0.73 -0.4 61,616 + Shew_0050 0.75 +0.3 61,616 + Shew_0050 0.75 -0.5 61,736 - +0.3 61,812 - -0.1 61,921 + +1.2 62,300 + Shew_0051 0.26 -2.1 62,300 + Shew_0051 0.26 +0.4 62,574 + Shew_0051 0.41 -1.8 62,695 - Shew_0051 0.47 -2.1 62,769 + Shew_0051 0.51 -1.3 62,778 - Shew_0051 0.52 +0.7 62,778 - Shew_0051 0.52 +1.2 62,993 + Shew_0051 0.63 -0.1 63,001 - Shew_0051 0.63 +0.1 63,001 - Shew_0051 0.63 -0.7 63,001 - Shew_0051 0.63 -0.8 63,141 - Shew_0051 0.71 +0.1 63,293 + Shew_0051 0.79 -1.3 63,301 - Shew_0051 0.79 -0.0 63,301 - Shew_0051 0.79 -1.5 63,303 + Shew_0051 0.79 +0.1 63,333 + Shew_0051 0.81 +0.7 63,426 - Shew_0051 0.86 +0.9 63,474 + Shew_0051 0.88 +0.2 63,474 + Shew_0051 0.88 -0.4 63,526 + +0.7 63,806 - +0.3 63,834 + +1.9 63,836 + -0.7 64,081 + Shew_0052 0.32 -0.1 64,089 - Shew_0052 0.33 -0.1 64,089 - Shew_0052 0.33 -3.8 64,094 - Shew_0052 0.34 -2.1 64,284 + Shew_0052 0.55 +0.1 64,292 - Shew_0052 0.56 +0.1 64,292 - Shew_0052 0.56 -2.8 64,326 + Shew_0052 0.59 +0.2 64,334 + Shew_0052 0.60 +0.3 64,611 + -0.2 64,619 - -0.4 64,673 - -1.4
Or see this region's nucleotide sequence