Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_939 and HP15_940 are separated by 3 nucleotides HP15_940 and HP15_941 are separated by 302 nucleotides HP15_941 and HP15_942 are separated by 255 nucleotides
HP15_939: HP15_939 - spermidine/putrescine ABC transporter ATPase subunit, at 953,917 to 955,035
_939
HP15_940: HP15_940 - putrescine ABC transporter, periplasmic putrescine-binding protein, at 955,039 to 956,145
_940
HP15_941: HP15_941 - conserved hypothetical protein, secreted, at 956,448 to 956,774
_941
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
Position (kb) 955
956
957 Strain fitness (log2 ratio) -1
0
1
2 at 954.050 kb on - strand, within HP15_939 at 954.196 kb on - strand, within HP15_939 at 954.368 kb on + strand, within HP15_939 at 954.376 kb on - strand, within HP15_939 at 954.381 kb on - strand, within HP15_939 at 954.400 kb on + strand, within HP15_939 at 954.415 kb on - strand, within HP15_939 at 954.526 kb on - strand, within HP15_939 at 954.546 kb on - strand, within HP15_939 at 954.552 kb on - strand, within HP15_939 at 954.568 kb on + strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.576 kb on - strand, within HP15_939 at 954.621 kb on + strand, within HP15_939 at 954.636 kb on - strand, within HP15_939 at 954.638 kb on - strand, within HP15_939 at 954.750 kb on - strand, within HP15_939 at 954.755 kb on - strand, within HP15_939 at 954.878 kb on - strand, within HP15_939 at 955.021 kb on - strand at 955.060 kb on + strand at 955.088 kb on - strand at 955.099 kb on - strand at 955.112 kb on + strand at 955.322 kb on + strand, within HP15_940 at 955.433 kb on + strand, within HP15_940 at 955.438 kb on - strand, within HP15_940 at 955.448 kb on - strand, within HP15_940 at 955.453 kb on - strand, within HP15_940 at 955.495 kb on - strand, within HP15_940 at 955.505 kb on + strand, within HP15_940 at 955.505 kb on + strand, within HP15_940 at 955.558 kb on + strand, within HP15_940 at 955.558 kb on + strand, within HP15_940 at 955.560 kb on - strand, within HP15_940 at 955.581 kb on - strand, within HP15_940 at 955.612 kb on - strand, within HP15_940 at 955.754 kb on + strand, within HP15_940 at 955.857 kb on - strand, within HP15_940 at 956.100 kb on + strand at 956.101 kb on + strand at 956.108 kb on - strand at 956.134 kb on - strand at 956.201 kb on + strand at 956.201 kb on + strand at 956.206 kb on + strand at 956.206 kb on + strand at 956.211 kb on + strand at 956.214 kb on - strand at 956.214 kb on - strand at 956.219 kb on - strand at 956.237 kb on + strand at 956.260 kb on - strand at 956.273 kb on - strand at 956.284 kb on - strand at 956.310 kb on - strand at 956.422 kb on - strand at 956.465 kb on + strand at 956.571 kb on + strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.624 kb on + strand, within HP15_941 at 956.671 kb on - strand, within HP15_941 at 956.730 kb on + strand, within HP15_941 at 956.873 kb on + strand at 956.956 kb on + strand at 956.956 kb on + strand at 956.968 kb on + strand at 956.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 954,050 - HP15_939 0.12 +1.4 954,196 - HP15_939 0.25 +0.4 954,368 + HP15_939 0.40 +2.2 954,376 - HP15_939 0.41 +0.5 954,381 - HP15_939 0.41 -0.2 954,400 + HP15_939 0.43 -0.2 954,415 - HP15_939 0.45 +0.1 954,526 - HP15_939 0.54 -0.4 954,546 - HP15_939 0.56 +1.3 954,552 - HP15_939 0.57 -1.1 954,568 + HP15_939 0.58 +1.7 954,576 - HP15_939 0.59 -0.2 954,576 - HP15_939 0.59 +0.4 954,576 - HP15_939 0.59 +1.8 954,576 - HP15_939 0.59 +2.1 954,576 - HP15_939 0.59 -0.1 954,621 + HP15_939 0.63 -1.4 954,636 - HP15_939 0.64 -0.9 954,638 - HP15_939 0.64 -0.4 954,750 - HP15_939 0.74 -0.4 954,755 - HP15_939 0.75 -0.4 954,878 - HP15_939 0.86 -0.5 955,021 - -0.4 955,060 + -0.3 955,088 - +0.9 955,099 - +0.2 955,112 + +0.1 955,322 + HP15_940 0.26 +0.1 955,433 + HP15_940 0.36 +2.3 955,438 - HP15_940 0.36 +2.6 955,448 - HP15_940 0.37 +0.5 955,453 - HP15_940 0.37 +0.3 955,495 - HP15_940 0.41 +0.5 955,505 + HP15_940 0.42 +2.1 955,505 + HP15_940 0.42 +1.9 955,558 + HP15_940 0.47 -1.3 955,558 + HP15_940 0.47 +0.5 955,560 - HP15_940 0.47 -1.1 955,581 - HP15_940 0.49 -0.2 955,612 - HP15_940 0.52 +1.3 955,754 + HP15_940 0.65 -0.5 955,857 - HP15_940 0.74 +2.1 956,100 + -0.5 956,101 + -0.8 956,108 - +0.9 956,134 - +1.9 956,201 + +0.8 956,201 + -0.2 956,206 + +1.4 956,206 + +0.9 956,211 + +2.2 956,214 - +2.1 956,214 - +2.0 956,219 - +0.2 956,237 + -0.6 956,260 - +2.1 956,273 - -0.5 956,284 - +2.3 956,310 - -0.5 956,422 - +1.9 956,465 + +0.9 956,571 + HP15_941 0.38 -0.0 956,574 - HP15_941 0.39 +0.9 956,574 - HP15_941 0.39 -0.1 956,624 + HP15_941 0.54 +1.9 956,671 - HP15_941 0.68 +2.3 956,730 + HP15_941 0.86 -0.5 956,873 + -0.4 956,956 + -0.3 956,956 + +0.5 956,968 + +2.0 956,976 - -0.2
Or see this region's nucleotide sequence