Strain Fitness in Marinobacter adhaerens HP15 around HP15_920

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_919 and HP15_920 are separated by 48 nucleotidesHP15_920 and HP15_921 are separated by 287 nucleotides HP15_919: HP15_919 - conserved hypothetical protein, membrane, at 932,692 to 933,429 _919 HP15_920: HP15_920 - protein belonging to uncharacterized protein family UPF0118, at 933,478 to 934,674 _920 HP15_921: HP15_921 - alcohol dehydrogenase, zinc-binding domain protein, at 934,962 to 935,918 _921 Position (kb) 933 934 935Strain fitness (log2 ratio) -1 0 1 2 3at 932.537 kb on - strandat 932.538 kb on + strandat 932.538 kb on + strandat 932.539 kb on - strandat 932.544 kb on - strandat 932.546 kb on - strandat 932.645 kb on + strandat 932.679 kb on - strandat 932.881 kb on - strand, within HP15_919at 932.888 kb on - strand, within HP15_919at 932.897 kb on - strand, within HP15_919at 932.913 kb on - strand, within HP15_919at 932.949 kb on + strand, within HP15_919at 933.018 kb on + strand, within HP15_919at 933.182 kb on + strand, within HP15_919at 933.189 kb on + strand, within HP15_919at 933.195 kb on + strand, within HP15_919at 933.234 kb on + strand, within HP15_919at 933.289 kb on + strand, within HP15_919at 933.289 kb on - strand, within HP15_919at 933.289 kb on - strand, within HP15_919at 933.320 kb on - strand, within HP15_919at 933.320 kb on - strand, within HP15_919at 933.378 kb on + strandat 933.409 kb on - strandat 933.436 kb on - strandat 933.451 kb on + strandat 933.457 kb on - strandat 933.469 kb on - strandat 933.478 kb on - strandat 933.493 kb on + strandat 933.493 kb on + strandat 933.523 kb on + strandat 933.523 kb on + strandat 933.555 kb on + strandat 933.562 kb on + strandat 933.604 kb on + strand, within HP15_920at 933.683 kb on - strand, within HP15_920at 933.687 kb on + strand, within HP15_920at 933.960 kb on - strand, within HP15_920at 934.080 kb on + strand, within HP15_920at 934.080 kb on - strand, within HP15_920at 934.104 kb on - strand, within HP15_920at 934.116 kb on - strand, within HP15_920at 934.236 kb on - strand, within HP15_920at 934.241 kb on - strand, within HP15_920at 934.241 kb on - strand, within HP15_920at 934.370 kb on - strand, within HP15_920at 934.375 kb on - strand, within HP15_920at 934.420 kb on - strand, within HP15_920at 934.634 kb on + strandat 934.835 kb on + strandat 934.839 kb on + strandat 934.888 kb on + strandat 934.936 kb on + strandat 935.009 kb on + strandat 935.024 kb on - strandat 935.054 kb on + strandat 935.311 kb on - strand, within HP15_921at 935.386 kb on + strand, within HP15_921at 935.443 kb on + strand, within HP15_921at 935.454 kb on + strand, within HP15_921at 935.454 kb on + strand, within HP15_921at 935.458 kb on - strand, within HP15_921at 935.477 kb on - strand, within HP15_921at 935.479 kb on + strand, within HP15_921at 935.482 kb on - strand, within HP15_921at 935.487 kb on - strand, within HP15_921at 935.518 kb on + strand, within HP15_921at 935.537 kb on - strand, within HP15_921at 935.602 kb on + strand, within HP15_921

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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932,537 - +0.4
932,538 + +1.9
932,538 + -0.8
932,539 - -0.4
932,544 - +0.0
932,546 - -0.1
932,645 + -0.8
932,679 - -0.7
932,881 - HP15_919 0.26 -0.4
932,888 - HP15_919 0.27 -1.0
932,897 - HP15_919 0.28 -0.2
932,913 - HP15_919 0.30 +0.2
932,949 + HP15_919 0.35 +0.0
933,018 + HP15_919 0.44 -1.2
933,182 + HP15_919 0.66 -0.4
933,189 + HP15_919 0.67 +2.1
933,195 + HP15_919 0.68 +1.0
933,234 + HP15_919 0.73 +0.9
933,289 + HP15_919 0.81 +1.0
933,289 - HP15_919 0.81 -0.5
933,289 - HP15_919 0.81 +1.1
933,320 - HP15_919 0.85 -0.6
933,320 - HP15_919 0.85 +1.3
933,378 + -1.2
933,409 - +0.5
933,436 - -0.6
933,451 + +2.1
933,457 - -0.1
933,469 - +0.1
933,478 - +0.8
933,493 + -0.5
933,493 + -0.2
933,523 + -1.4
933,523 + -0.4
933,555 + -0.2
933,562 + -0.4
933,604 + HP15_920 0.11 +0.3
933,683 - HP15_920 0.17 -0.4
933,687 + HP15_920 0.17 -1.0
933,960 - HP15_920 0.40 +2.3
934,080 + HP15_920 0.50 -0.4
934,080 - HP15_920 0.50 -0.4
934,104 - HP15_920 0.52 +0.6
934,116 - HP15_920 0.53 +1.7
934,236 - HP15_920 0.63 +3.1
934,241 - HP15_920 0.64 -0.1
934,241 - HP15_920 0.64 +2.1
934,370 - HP15_920 0.75 +2.1
934,375 - HP15_920 0.75 +1.4
934,420 - HP15_920 0.79 +2.1
934,634 + -0.2
934,835 + +2.4
934,839 + +0.8
934,888 + +2.9
934,936 + +0.0
935,009 + +0.5
935,024 - -0.1
935,054 + +2.1
935,311 - HP15_921 0.36 +2.0
935,386 + HP15_921 0.44 -0.4
935,443 + HP15_921 0.50 +2.2
935,454 + HP15_921 0.51 +1.1
935,454 + HP15_921 0.51 +1.7
935,458 - HP15_921 0.52 -1.2
935,477 - HP15_921 0.54 +0.6
935,479 + HP15_921 0.54 +1.8
935,482 - HP15_921 0.54 -0.4
935,487 - HP15_921 0.55 -0.1
935,518 + HP15_921 0.58 +2.2
935,537 - HP15_921 0.60 +0.2
935,602 + HP15_921 0.67 -0.3

Or see this region's nucleotide sequence