Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_879 and HP15_880 are separated by 57 nucleotides HP15_880 and HP15_881 are separated by 4 nucleotides HP15_881 and HP15_882 are separated by 72 nucleotides
HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683
_879
HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472
_880
HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019
_881
HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660
_882
Position (kb)
897
898
899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.547 kb on + strand, within HP15_879 at 896.676 kb on - strand at 896.917 kb on + strand, within HP15_880 at 897.091 kb on - strand, within HP15_880 at 897.129 kb on + strand, within HP15_880 at 897.189 kb on - strand, within HP15_880 at 897.278 kb on + strand, within HP15_880 at 897.281 kb on - strand, within HP15_880 at 897.288 kb on + strand, within HP15_880 at 897.296 kb on - strand, within HP15_880 at 897.326 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.448 kb on - strand at 897.566 kb on + strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.587 kb on + strand, within HP15_881 at 897.646 kb on - strand, within HP15_881 at 897.747 kb on - strand, within HP15_881 at 897.851 kb on - strand, within HP15_881 at 897.918 kb on - strand, within HP15_881 at 897.955 kb on + strand, within HP15_881 at 897.963 kb on - strand, within HP15_881 at 898.144 kb on + strand at 898.238 kb on + strand at 898.246 kb on - strand at 898.246 kb on - strand at 898.411 kb on + strand, within HP15_882 at 898.492 kb on - strand, within HP15_882 at 898.642 kb on + strand, within HP15_882 at 898.643 kb on - strand, within HP15_882 at 898.720 kb on + strand, within HP15_882 at 898.809 kb on + strand, within HP15_882 at 898.908 kb on - strand, within HP15_882 at 898.920 kb on - strand, within HP15_882 at 898.968 kb on + strand, within HP15_882 at 898.968 kb on + strand, within HP15_882
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 896,514 + HP15_879 0.75 -1.2 896,514 + HP15_879 0.75 +0.5 896,514 + HP15_879 0.75 -0.3 896,547 + HP15_879 0.80 -0.1 896,676 - -0.5 896,917 + HP15_880 0.24 +2.0 897,091 - HP15_880 0.48 +1.9 897,129 + HP15_880 0.53 +1.2 897,189 - HP15_880 0.61 -0.2 897,278 + HP15_880 0.73 -0.7 897,281 - HP15_880 0.74 -0.4 897,288 + HP15_880 0.75 +1.4 897,296 - HP15_880 0.76 +0.8 897,326 + HP15_880 0.80 -0.7 897,345 + HP15_880 0.83 +0.1 897,345 + HP15_880 0.83 +0.6 897,353 - HP15_880 0.84 -1.3 897,353 - HP15_880 0.84 +2.1 897,353 - HP15_880 0.84 -1.2 897,353 - HP15_880 0.84 -0.2 897,448 - +1.8 897,566 + HP15_881 0.16 -0.6 897,579 - HP15_881 0.19 +2.0 897,579 - HP15_881 0.19 +0.5 897,587 + HP15_881 0.20 +2.4 897,646 - HP15_881 0.31 -1.7 897,747 - HP15_881 0.50 -0.6 897,851 - HP15_881 0.69 -1.2 897,918 - HP15_881 0.81 +0.1 897,955 + HP15_881 0.88 -2.1 897,963 - HP15_881 0.90 -0.1 898,144 + +0.0 898,238 + -0.7 898,246 - -0.9 898,246 - +2.2 898,411 + HP15_882 0.20 +0.5 898,492 - HP15_882 0.25 -0.8 898,642 + HP15_882 0.35 +2.0 898,643 - HP15_882 0.35 +0.5 898,720 + HP15_882 0.40 -0.0 898,809 + HP15_882 0.46 +0.0 898,908 - HP15_882 0.52 +1.8 898,920 - HP15_882 0.53 -0.1 898,968 + HP15_882 0.56 +1.5 898,968 + HP15_882 0.56 +2.2
Or see this region's nucleotide sequence