Strain Fitness in Marinobacter adhaerens HP15 around HP15_881

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_879 and HP15_880 are separated by 57 nucleotidesHP15_880 and HP15_881 are separated by 4 nucleotidesHP15_881 and HP15_882 are separated by 72 nucleotides HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683 _879 HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472 _880 HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019 _881 HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660 _882 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.514 kb on + strand, within HP15_879at 896.547 kb on + strand, within HP15_879at 896.676 kb on - strandat 896.917 kb on + strand, within HP15_880at 897.091 kb on - strand, within HP15_880at 897.129 kb on + strand, within HP15_880at 897.189 kb on - strand, within HP15_880at 897.278 kb on + strand, within HP15_880at 897.281 kb on - strand, within HP15_880at 897.288 kb on + strand, within HP15_880at 897.296 kb on - strand, within HP15_880at 897.326 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.345 kb on + strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.353 kb on - strand, within HP15_880at 897.448 kb on - strandat 897.566 kb on + strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.579 kb on - strand, within HP15_881at 897.587 kb on + strand, within HP15_881at 897.646 kb on - strand, within HP15_881at 897.747 kb on - strand, within HP15_881at 897.851 kb on - strand, within HP15_881at 897.918 kb on - strand, within HP15_881at 897.955 kb on + strand, within HP15_881at 897.963 kb on - strand, within HP15_881at 898.144 kb on + strandat 898.238 kb on + strandat 898.246 kb on - strandat 898.246 kb on - strandat 898.411 kb on + strand, within HP15_882at 898.492 kb on - strand, within HP15_882at 898.642 kb on + strand, within HP15_882at 898.643 kb on - strand, within HP15_882at 898.720 kb on + strand, within HP15_882at 898.809 kb on + strand, within HP15_882at 898.908 kb on - strand, within HP15_882at 898.920 kb on - strand, within HP15_882at 898.968 kb on + strand, within HP15_882at 898.968 kb on + strand, within HP15_882

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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896,514 + HP15_879 0.75 -1.2
896,514 + HP15_879 0.75 +0.5
896,514 + HP15_879 0.75 -0.3
896,547 + HP15_879 0.80 -0.1
896,676 - -0.5
896,917 + HP15_880 0.24 +2.0
897,091 - HP15_880 0.48 +1.9
897,129 + HP15_880 0.53 +1.2
897,189 - HP15_880 0.61 -0.2
897,278 + HP15_880 0.73 -0.7
897,281 - HP15_880 0.74 -0.4
897,288 + HP15_880 0.75 +1.4
897,296 - HP15_880 0.76 +0.8
897,326 + HP15_880 0.80 -0.7
897,345 + HP15_880 0.83 +0.1
897,345 + HP15_880 0.83 +0.6
897,353 - HP15_880 0.84 -1.3
897,353 - HP15_880 0.84 +2.1
897,353 - HP15_880 0.84 -1.2
897,353 - HP15_880 0.84 -0.2
897,448 - +1.8
897,566 + HP15_881 0.16 -0.6
897,579 - HP15_881 0.19 +2.0
897,579 - HP15_881 0.19 +0.5
897,587 + HP15_881 0.20 +2.4
897,646 - HP15_881 0.31 -1.7
897,747 - HP15_881 0.50 -0.6
897,851 - HP15_881 0.69 -1.2
897,918 - HP15_881 0.81 +0.1
897,955 + HP15_881 0.88 -2.1
897,963 - HP15_881 0.90 -0.1
898,144 + +0.0
898,238 + -0.7
898,246 - -0.9
898,246 - +2.2
898,411 + HP15_882 0.20 +0.5
898,492 - HP15_882 0.25 -0.8
898,642 + HP15_882 0.35 +2.0
898,643 - HP15_882 0.35 +0.5
898,720 + HP15_882 0.40 -0.0
898,809 + HP15_882 0.46 +0.0
898,908 - HP15_882 0.52 +1.8
898,920 - HP15_882 0.53 -0.1
898,968 + HP15_882 0.56 +1.5
898,968 + HP15_882 0.56 +2.2

Or see this region's nucleotide sequence