Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g93

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g91 and HP15_p187g92 are separated by 151 nucleotidesHP15_p187g92 and HP15_p187g93 are separated by 182 nucleotidesHP15_p187g93 and HP15_p187g94 are separated by 193 nucleotides HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886 _p187g91 HP15_p187g92: HP15_p187g92 - hypothetical protein, at 89,038 to 89,142 _p187g92 HP15_p187g93: HP15_p187g93 - transcriptional activator RfaH, at 89,325 to 89,762 _p187g93 HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000 _p187g94 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 88.358 kb on + strand, within HP15_p187g91at 88.358 kb on + strand, within HP15_p187g91at 88.359 kb on + strand, within HP15_p187g91at 88.359 kb on + strand, within HP15_p187g91at 88.359 kb on + strand, within HP15_p187g91at 88.364 kb on + strand, within HP15_p187g91at 88.366 kb on - strand, within HP15_p187g91at 88.367 kb on - strand, within HP15_p187g91at 88.393 kb on - strand, within HP15_p187g91at 88.398 kb on + strand, within HP15_p187g91at 88.406 kb on + strand, within HP15_p187g91at 88.406 kb on + strand, within HP15_p187g91at 88.409 kb on + strand, within HP15_p187g91at 88.409 kb on + strand, within HP15_p187g91at 88.414 kb on - strand, within HP15_p187g91at 88.414 kb on - strand, within HP15_p187g91at 88.414 kb on - strand, within HP15_p187g91at 88.414 kb on - strand, within HP15_p187g91at 88.417 kb on - strand, within HP15_p187g91at 88.417 kb on - strand, within HP15_p187g91at 88.453 kb on + strand, within HP15_p187g91at 88.660 kb on + strand, within HP15_p187g91at 88.660 kb on + strand, within HP15_p187g91at 88.660 kb on + strand, within HP15_p187g91at 88.668 kb on - strand, within HP15_p187g91at 88.674 kb on + strand, within HP15_p187g91at 88.682 kb on + strand, within HP15_p187g91at 88.682 kb on + strand, within HP15_p187g91at 88.732 kb on + strandat 88.740 kb on - strandat 88.740 kb on - strandat 88.740 kb on - strandat 88.769 kb on + strandat 88.777 kb on - strandat 88.777 kb on - strandat 88.777 kb on - strandat 88.787 kb on - strandat 88.911 kb on - strandat 88.951 kb on + strandat 88.951 kb on + strandat 88.981 kb on + strandat 88.981 kb on + strandat 88.989 kb on - strandat 88.989 kb on - strandat 88.989 kb on - strandat 88.994 kb on + strandat 89.067 kb on + strand, within HP15_p187g92at 89.074 kb on - strand, within HP15_p187g92at 89.095 kb on - strand, within HP15_p187g92at 89.099 kb on + strand, within HP15_p187g92at 89.099 kb on + strand, within HP15_p187g92at 89.107 kb on - strand, within HP15_p187g92at 89.143 kb on + strandat 89.147 kb on + strandat 89.203 kb on - strandat 89.206 kb on + strandat 89.213 kb on + strandat 89.219 kb on - strandat 89.220 kb on + strandat 89.243 kb on - strandat 89.256 kb on - strandat 89.290 kb on - strandat 89.337 kb on + strandat 89.383 kb on + strand, within HP15_p187g93at 89.393 kb on + strand, within HP15_p187g93at 89.401 kb on - strand, within HP15_p187g93at 89.401 kb on - strand, within HP15_p187g93at 89.414 kb on - strand, within HP15_p187g93at 89.422 kb on + strand, within HP15_p187g93at 89.451 kb on - strand, within HP15_p187g93at 89.482 kb on + strand, within HP15_p187g93at 89.501 kb on - strand, within HP15_p187g93at 89.505 kb on + strand, within HP15_p187g93at 89.554 kb on - strand, within HP15_p187g93at 89.554 kb on - strand, within HP15_p187g93at 89.603 kb on + strand, within HP15_p187g93at 89.669 kb on + strand, within HP15_p187g93at 89.676 kb on - strand, within HP15_p187g93at 89.698 kb on - strand, within HP15_p187g93at 89.782 kb on + strandat 89.782 kb on + strandat 89.782 kb on + strandat 89.785 kb on - strandat 89.785 kb on - strandat 89.790 kb on - strandat 89.790 kb on - strandat 89.790 kb on - strandat 89.823 kb on + strandat 89.823 kb on + strandat 89.823 kb on + strandat 89.836 kb on - strandat 89.914 kb on + strandat 89.916 kb on + strandat 89.941 kb on + strandat 89.951 kb on + strandat 89.951 kb on + strandat 89.951 kb on + strandat 89.951 kb on + strandat 89.951 kb on + strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.959 kb on - strandat 89.973 kb on + strandat 90.024 kb on + strandat 90.032 kb on - strandat 90.044 kb on + strandat 90.111 kb on + strand, within HP15_p187g94at 90.138 kb on + strand, within HP15_p187g94at 90.138 kb on + strand, within HP15_p187g94at 90.138 kb on + strand, within HP15_p187g94at 90.138 kb on + strand, within HP15_p187g94at 90.167 kb on - strand, within HP15_p187g94at 90.167 kb on - strand, within HP15_p187g94at 90.176 kb on - strand, within HP15_p187g94at 90.292 kb on + strand, within HP15_p187g94at 90.305 kb on + strand, within HP15_p187g94at 90.395 kb on + strand, within HP15_p187g94at 90.395 kb on + strand, within HP15_p187g94at 90.400 kb on + strand, within HP15_p187g94at 90.426 kb on + strand, within HP15_p187g94at 90.444 kb on + strand, within HP15_p187g94at 90.474 kb on - strand, within HP15_p187g94at 90.499 kb on + strand, within HP15_p187g94at 90.499 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.689 kb on + strand, within HP15_p187g94at 90.697 kb on - strand, within HP15_p187g94at 90.713 kb on + strand, within HP15_p187g94at 90.715 kb on + strand, within HP15_p187g94at 90.727 kb on - strand, within HP15_p187g94at 90.744 kb on + strand, within HP15_p187g94at 90.762 kb on + strand, within HP15_p187g94

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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88,358 + HP15_p187g91 0.67 -0.2
88,358 + HP15_p187g91 0.67 -0.7
88,359 + HP15_p187g91 0.68 +2.2
88,359 + HP15_p187g91 0.68 +0.1
88,359 + HP15_p187g91 0.68 +1.8
88,364 + HP15_p187g91 0.68 -0.2
88,366 - HP15_p187g91 0.68 -0.7
88,367 - HP15_p187g91 0.68 +2.3
88,393 - HP15_p187g91 0.70 +1.8
88,398 + HP15_p187g91 0.70 +2.1
88,406 + HP15_p187g91 0.70 +0.1
88,406 + HP15_p187g91 0.70 -0.3
88,409 + HP15_p187g91 0.71 -0.6
88,409 + HP15_p187g91 0.71 +0.4
88,414 - HP15_p187g91 0.71 +0.3
88,414 - HP15_p187g91 0.71 +0.3
88,414 - HP15_p187g91 0.71 +0.5
88,414 - HP15_p187g91 0.71 -0.6
88,417 - HP15_p187g91 0.71 +0.2
88,417 - HP15_p187g91 0.71 -0.2
88,453 + HP15_p187g91 0.73 -0.0
88,660 + HP15_p187g91 0.86 -0.7
88,660 + HP15_p187g91 0.86 +2.9
88,660 + HP15_p187g91 0.86 +2.5
88,668 - HP15_p187g91 0.87 +2.2
88,674 + HP15_p187g91 0.87 +0.2
88,682 + HP15_p187g91 0.87 +0.5
88,682 + HP15_p187g91 0.87 +2.2
88,732 + -1.4
88,740 - +1.7
88,740 - -0.3
88,740 - +1.4
88,769 + +2.0
88,777 - -0.7
88,777 - +2.0
88,777 - -0.9
88,787 - -0.4
88,911 - -0.0
88,951 + -0.6
88,951 + +1.9
88,981 + +2.3
88,981 + -0.5
88,989 - -0.2
88,989 - -0.9
88,989 - +1.9
88,994 + +2.6
89,067 + HP15_p187g92 0.28 +1.9
89,074 - HP15_p187g92 0.34 -0.5
89,095 - HP15_p187g92 0.54 +1.8
89,099 + HP15_p187g92 0.58 -0.7
89,099 + HP15_p187g92 0.58 +1.6
89,107 - HP15_p187g92 0.66 -0.0
89,143 + +2.0
89,147 + -1.1
89,203 - -0.5
89,206 + -0.5
89,213 + -0.0
89,219 - +1.4
89,220 + +0.4
89,243 - -1.0
89,256 - -0.5
89,290 - +1.8
89,337 + +1.9
89,383 + HP15_p187g93 0.13 -0.2
89,393 + HP15_p187g93 0.16 +0.7
89,401 - HP15_p187g93 0.17 +0.6
89,401 - HP15_p187g93 0.17 +2.2
89,414 - HP15_p187g93 0.20 -0.4
89,422 + HP15_p187g93 0.22 +2.4
89,451 - HP15_p187g93 0.29 -0.9
89,482 + HP15_p187g93 0.36 +2.2
89,501 - HP15_p187g93 0.40 +1.3
89,505 + HP15_p187g93 0.41 +0.1
89,554 - HP15_p187g93 0.52 +0.1
89,554 - HP15_p187g93 0.52 -1.1
89,603 + HP15_p187g93 0.63 -0.5
89,669 + HP15_p187g93 0.79 +1.7
89,676 - HP15_p187g93 0.80 -0.0
89,698 - HP15_p187g93 0.85 +1.6
89,782 + +0.7
89,782 + +1.9
89,782 + -0.8
89,785 - +1.7
89,785 - -0.3
89,790 - +1.8
89,790 - -0.0
89,790 - +0.1
89,823 + +2.3
89,823 + +2.0
89,823 + -1.0
89,836 - +1.8
89,914 + +0.2
89,916 + -1.8
89,941 + +0.8
89,951 + -1.5
89,951 + -0.3
89,951 + +2.2
89,951 + +2.0
89,951 + -0.7
89,959 - -0.0
89,959 - +2.1
89,959 - +2.6
89,959 - -0.5
89,959 - +1.0
89,959 - -0.3
89,959 - +2.4
89,973 + -0.2
90,024 + +2.1
90,032 - -1.0
90,044 + -0.3
90,111 + HP15_p187g94 0.15 -0.5
90,138 + HP15_p187g94 0.17 -0.6
90,138 + HP15_p187g94 0.17 -0.9
90,138 + HP15_p187g94 0.17 +1.9
90,138 + HP15_p187g94 0.17 +2.1
90,167 - HP15_p187g94 0.20 -0.6
90,167 - HP15_p187g94 0.20 +1.7
90,176 - HP15_p187g94 0.21 -0.1
90,292 + HP15_p187g94 0.32 +1.9
90,305 + HP15_p187g94 0.33 -1.2
90,395 + HP15_p187g94 0.42 +0.5
90,395 + HP15_p187g94 0.42 +0.6
90,400 + HP15_p187g94 0.42 -0.9
90,426 + HP15_p187g94 0.45 -0.6
90,444 + HP15_p187g94 0.47 +1.9
90,474 - HP15_p187g94 0.50 +1.5
90,499 + HP15_p187g94 0.52 +1.6
90,499 - HP15_p187g94 0.52 -0.3
90,596 - HP15_p187g94 0.61 -0.9
90,596 - HP15_p187g94 0.61 +0.3
90,596 - HP15_p187g94 0.61 +2.0
90,596 - HP15_p187g94 0.61 -0.0
90,689 + HP15_p187g94 0.70 +0.3
90,697 - HP15_p187g94 0.71 +0.3
90,713 + HP15_p187g94 0.72 +0.1
90,715 + HP15_p187g94 0.73 +0.8
90,727 - HP15_p187g94 0.74 +1.4
90,744 + HP15_p187g94 0.75 +1.8
90,762 + HP15_p187g94 0.77 -0.2

Or see this region's nucleotide sequence