Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3843 and HP15_3844 are separated by 143 nucleotides HP15_3844 and HP15_3845 are separated by 16 nucleotides
HP15_3843: HP15_3843 - iron(III) ABC transporter, periplasmic iron-compound-binding protein, at 4,069,664 to 4,070,686
_3843
HP15_3844: HP15_3844 - membrane protein containing SNARE associated golgi protein domain, at 4,070,830 to 4,071,522
_3844
HP15_3845: HP15_3845 - ADP-ribosylation/crystallin J1-like protein, at 4,071,539 to 4,072,711
_3845
Position (kb)
4070
4071
4072 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4069.947 kb on + strand, within HP15_3843 at 4069.970 kb on + strand, within HP15_3843 at 4069.978 kb on - strand, within HP15_3843 at 4069.978 kb on - strand, within HP15_3843 at 4070.013 kb on + strand, within HP15_3843 at 4070.033 kb on - strand, within HP15_3843 at 4070.033 kb on - strand, within HP15_3843 at 4070.104 kb on + strand, within HP15_3843 at 4070.110 kb on + strand, within HP15_3843 at 4070.140 kb on + strand, within HP15_3843 at 4070.176 kb on - strand, within HP15_3843 at 4070.224 kb on + strand, within HP15_3843 at 4070.251 kb on + strand, within HP15_3843 at 4070.254 kb on + strand, within HP15_3843 at 4070.270 kb on + strand, within HP15_3843 at 4070.270 kb on + strand, within HP15_3843 at 4070.297 kb on + strand, within HP15_3843 at 4070.329 kb on - strand, within HP15_3843 at 4070.341 kb on + strand, within HP15_3843 at 4070.355 kb on + strand, within HP15_3843 at 4070.384 kb on - strand, within HP15_3843 at 4070.412 kb on + strand, within HP15_3843 at 4070.478 kb on - strand, within HP15_3843 at 4070.521 kb on + strand, within HP15_3843 at 4070.726 kb on - strand at 4070.741 kb on - strand at 4070.789 kb on + strand at 4070.803 kb on + strand at 4070.908 kb on - strand, within HP15_3844 at 4070.934 kb on - strand, within HP15_3844 at 4071.037 kb on - strand, within HP15_3844 at 4071.037 kb on - strand, within HP15_3844 at 4071.120 kb on - strand, within HP15_3844 at 4071.228 kb on + strand, within HP15_3844 at 4071.258 kb on - strand, within HP15_3844 at 4071.259 kb on + strand, within HP15_3844 at 4071.264 kb on + strand, within HP15_3844 at 4071.277 kb on - strand, within HP15_3844 at 4071.330 kb on + strand, within HP15_3844 at 4071.352 kb on + strand, within HP15_3844 at 4071.360 kb on - strand, within HP15_3844 at 4071.381 kb on - strand, within HP15_3844 at 4071.386 kb on + strand, within HP15_3844 at 4071.398 kb on + strand, within HP15_3844 at 4071.455 kb on + strand at 4071.463 kb on - strand at 4071.524 kb on - strand at 4071.594 kb on - strand at 4071.605 kb on + strand at 4071.610 kb on + strand at 4071.613 kb on - strand at 4071.613 kb on - strand at 4071.723 kb on + strand, within HP15_3845 at 4071.731 kb on - strand, within HP15_3845 at 4071.736 kb on - strand, within HP15_3845 at 4071.778 kb on + strand, within HP15_3845 at 4071.851 kb on - strand, within HP15_3845 at 4071.909 kb on + strand, within HP15_3845 at 4071.917 kb on - strand, within HP15_3845 at 4072.045 kb on - strand, within HP15_3845 at 4072.058 kb on - strand, within HP15_3845 at 4072.068 kb on - strand, within HP15_3845 at 4072.116 kb on + strand, within HP15_3845 at 4072.226 kb on + strand, within HP15_3845 at 4072.305 kb on + strand, within HP15_3845 at 4072.424 kb on - strand, within HP15_3845
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 4,069,947 + HP15_3843 0.28 +0.9 4,069,970 + HP15_3843 0.30 +1.0 4,069,978 - HP15_3843 0.31 +0.4 4,069,978 - HP15_3843 0.31 +2.0 4,070,013 + HP15_3843 0.34 +2.5 4,070,033 - HP15_3843 0.36 -1.1 4,070,033 - HP15_3843 0.36 -0.6 4,070,104 + HP15_3843 0.43 +0.7 4,070,110 + HP15_3843 0.44 +2.5 4,070,140 + HP15_3843 0.47 +1.7 4,070,176 - HP15_3843 0.50 +0.4 4,070,224 + HP15_3843 0.55 +2.2 4,070,251 + HP15_3843 0.57 -0.0 4,070,254 + HP15_3843 0.58 +1.3 4,070,270 + HP15_3843 0.59 -0.8 4,070,270 + HP15_3843 0.59 +2.2 4,070,297 + HP15_3843 0.62 -0.3 4,070,329 - HP15_3843 0.65 +1.7 4,070,341 + HP15_3843 0.66 -1.1 4,070,355 + HP15_3843 0.68 +0.4 4,070,384 - HP15_3843 0.70 -0.7 4,070,412 + HP15_3843 0.73 +0.7 4,070,478 - HP15_3843 0.80 -1.0 4,070,521 + HP15_3843 0.84 +2.2 4,070,726 - -0.2 4,070,741 - -0.1 4,070,789 + -0.0 4,070,803 + +0.5 4,070,908 - HP15_3844 0.11 -0.6 4,070,934 - HP15_3844 0.15 +2.6 4,071,037 - HP15_3844 0.30 -0.3 4,071,037 - HP15_3844 0.30 -0.8 4,071,120 - HP15_3844 0.42 -0.8 4,071,228 + HP15_3844 0.57 -0.8 4,071,258 - HP15_3844 0.62 +1.4 4,071,259 + HP15_3844 0.62 +3.7 4,071,264 + HP15_3844 0.63 +2.3 4,071,277 - HP15_3844 0.65 -0.6 4,071,330 + HP15_3844 0.72 -0.4 4,071,352 + HP15_3844 0.75 -0.3 4,071,360 - HP15_3844 0.76 -1.2 4,071,381 - HP15_3844 0.80 -1.2 4,071,386 + HP15_3844 0.80 -0.6 4,071,398 + HP15_3844 0.82 -0.9 4,071,455 + -0.3 4,071,463 - -0.2 4,071,524 - +1.9 4,071,594 - +0.1 4,071,605 + +2.5 4,071,610 + -0.7 4,071,613 - +3.0 4,071,613 - -0.6 4,071,723 + HP15_3845 0.16 -1.1 4,071,731 - HP15_3845 0.16 -0.1 4,071,736 - HP15_3845 0.17 +0.0 4,071,778 + HP15_3845 0.20 -1.0 4,071,851 - HP15_3845 0.27 +2.4 4,071,909 + HP15_3845 0.32 -0.3 4,071,917 - HP15_3845 0.32 -0.5 4,072,045 - HP15_3845 0.43 +0.4 4,072,058 - HP15_3845 0.44 +0.2 4,072,068 - HP15_3845 0.45 -0.2 4,072,116 + HP15_3845 0.49 +2.3 4,072,226 + HP15_3845 0.59 -0.3 4,072,305 + HP15_3845 0.65 +2.2 4,072,424 - HP15_3845 0.75 -1.5
Or see this region's nucleotide sequence