Strain Fitness in Marinobacter adhaerens HP15 around HP15_3694

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3693 and HP15_3694 are separated by 3 nucleotidesHP15_3694 and HP15_3695 are separated by 38 nucleotidesHP15_3695 and HP15_3696 overlap by 2 nucleotides HP15_3693: HP15_3693 - multidrug resistance protein, at 3,893,326 to 3,896,472 _3693 HP15_3694: HP15_3694 - efflux transporter, RND family, MFP subunit, at 3,896,476 to 3,897,570 _3694 HP15_3695: HP15_3695 - lipoprotein, at 3,897,609 to 3,898,169 _3695 HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237 _3696 Position (kb) 3896 3897 3898Strain fitness (log2 ratio) -1 0 1 2 3at 3895.598 kb on + strand, within HP15_3693at 3895.604 kb on + strand, within HP15_3693at 3895.668 kb on + strand, within HP15_3693at 3895.684 kb on + strand, within HP15_3693at 3895.692 kb on - strand, within HP15_3693at 3895.692 kb on - strand, within HP15_3693at 3895.801 kb on - strand, within HP15_3693at 3895.877 kb on + strand, within HP15_3693at 3895.910 kb on + strand, within HP15_3693at 3895.995 kb on - strand, within HP15_3693at 3896.016 kb on + strand, within HP15_3693at 3896.054 kb on - strand, within HP15_3693at 3896.099 kb on - strand, within HP15_3693at 3896.465 kb on - strandat 3896.524 kb on - strandat 3896.552 kb on + strandat 3896.560 kb on - strandat 3896.562 kb on + strandat 3896.571 kb on - strandat 3896.603 kb on - strand, within HP15_3694at 3896.637 kb on + strand, within HP15_3694at 3896.637 kb on + strand, within HP15_3694at 3896.715 kb on - strand, within HP15_3694at 3896.786 kb on - strand, within HP15_3694at 3896.788 kb on + strand, within HP15_3694at 3896.836 kb on + strand, within HP15_3694at 3896.892 kb on - strand, within HP15_3694at 3896.912 kb on + strand, within HP15_3694at 3896.930 kb on + strand, within HP15_3694at 3896.938 kb on - strand, within HP15_3694at 3896.975 kb on + strand, within HP15_3694at 3896.976 kb on - strand, within HP15_3694at 3896.987 kb on + strand, within HP15_3694at 3896.995 kb on - strand, within HP15_3694at 3896.995 kb on - strand, within HP15_3694at 3897.043 kb on - strand, within HP15_3694at 3897.100 kb on + strand, within HP15_3694at 3897.118 kb on - strand, within HP15_3694at 3897.176 kb on - strand, within HP15_3694at 3897.176 kb on - strand, within HP15_3694at 3897.176 kb on - strand, within HP15_3694at 3897.246 kb on + strand, within HP15_3694at 3897.257 kb on + strand, within HP15_3694at 3897.257 kb on + strand, within HP15_3694at 3897.265 kb on - strand, within HP15_3694at 3897.363 kb on + strand, within HP15_3694at 3897.373 kb on + strand, within HP15_3694at 3897.614 kb on - strandat 3897.677 kb on - strand, within HP15_3695at 3897.733 kb on - strand, within HP15_3695at 3897.830 kb on + strand, within HP15_3695at 3897.867 kb on - strand, within HP15_3695at 3897.887 kb on + strand, within HP15_3695at 3897.913 kb on - strand, within HP15_3695at 3898.026 kb on + strand, within HP15_3695at 3898.040 kb on + strand, within HP15_3695at 3898.048 kb on - strand, within HP15_3695at 3898.110 kb on - strand, within HP15_3695at 3898.180 kb on - strandat 3898.180 kb on - strandat 3898.181 kb on + strandat 3898.189 kb on - strandat 3898.340 kb on + strandat 3898.389 kb on - strand, within HP15_3696at 3898.415 kb on - strand, within HP15_3696at 3898.476 kb on - strand, within HP15_3696at 3898.490 kb on + strand, within HP15_3696at 3898.495 kb on + strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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3,895,598 + HP15_3693 0.72 +0.7
3,895,604 + HP15_3693 0.72 -0.5
3,895,668 + HP15_3693 0.74 +0.5
3,895,684 + HP15_3693 0.75 +0.7
3,895,692 - HP15_3693 0.75 -0.2
3,895,692 - HP15_3693 0.75 -0.2
3,895,801 - HP15_3693 0.79 -1.0
3,895,877 + HP15_3693 0.81 +1.7
3,895,910 + HP15_3693 0.82 -0.6
3,895,995 - HP15_3693 0.85 +1.5
3,896,016 + HP15_3693 0.85 +0.4
3,896,054 - HP15_3693 0.87 -0.7
3,896,099 - HP15_3693 0.88 +2.0
3,896,465 - +0.6
3,896,524 - -0.8
3,896,552 + +0.7
3,896,560 - +0.2
3,896,562 + -0.5
3,896,571 - +2.0
3,896,603 - HP15_3694 0.12 +2.1
3,896,637 + HP15_3694 0.15 -0.3
3,896,637 + HP15_3694 0.15 -0.2
3,896,715 - HP15_3694 0.22 +0.0
3,896,786 - HP15_3694 0.28 +2.2
3,896,788 + HP15_3694 0.28 +3.7
3,896,836 + HP15_3694 0.33 +2.3
3,896,892 - HP15_3694 0.38 -0.5
3,896,912 + HP15_3694 0.40 +0.3
3,896,930 + HP15_3694 0.41 -0.4
3,896,938 - HP15_3694 0.42 +2.1
3,896,975 + HP15_3694 0.46 +1.8
3,896,976 - HP15_3694 0.46 -0.3
3,896,987 + HP15_3694 0.47 -0.3
3,896,995 - HP15_3694 0.47 -0.5
3,896,995 - HP15_3694 0.47 +1.3
3,897,043 - HP15_3694 0.52 +1.8
3,897,100 + HP15_3694 0.57 +0.4
3,897,118 - HP15_3694 0.59 -0.5
3,897,176 - HP15_3694 0.64 -0.7
3,897,176 - HP15_3694 0.64 -0.9
3,897,176 - HP15_3694 0.64 +1.0
3,897,246 + HP15_3694 0.70 +2.4
3,897,257 + HP15_3694 0.71 -0.0
3,897,257 + HP15_3694 0.71 +0.5
3,897,265 - HP15_3694 0.72 -0.6
3,897,363 + HP15_3694 0.81 -0.4
3,897,373 + HP15_3694 0.82 +0.4
3,897,614 - -0.5
3,897,677 - HP15_3695 0.12 +0.6
3,897,733 - HP15_3695 0.22 -1.1
3,897,830 + HP15_3695 0.39 +1.7
3,897,867 - HP15_3695 0.46 +0.9
3,897,887 + HP15_3695 0.50 +2.2
3,897,913 - HP15_3695 0.54 -0.1
3,898,026 + HP15_3695 0.74 -0.2
3,898,040 + HP15_3695 0.77 -0.4
3,898,048 - HP15_3695 0.78 +2.3
3,898,110 - HP15_3695 0.89 -0.6
3,898,180 - -0.2
3,898,180 - -0.5
3,898,181 + -0.2
3,898,189 - +0.5
3,898,340 + -0.1
3,898,389 - HP15_3696 0.11 +2.7
3,898,415 - HP15_3696 0.12 -1.5
3,898,476 - HP15_3696 0.15 -1.6
3,898,490 + HP15_3696 0.16 -0.9
3,898,495 + HP15_3696 0.16 -0.8
3,898,503 - HP15_3696 0.16 +1.4
3,898,503 - HP15_3696 0.16 -0.5
3,898,503 - HP15_3696 0.16 -0.9

Or see this region's nucleotide sequence