Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3693 and HP15_3694 are separated by 3 nucleotides HP15_3694 and HP15_3695 are separated by 38 nucleotides HP15_3695 and HP15_3696 overlap by 2 nucleotides
HP15_3693: HP15_3693 - multidrug resistance protein, at 3,893,326 to 3,896,472
_3693
HP15_3694: HP15_3694 - efflux transporter, RND family, MFP subunit, at 3,896,476 to 3,897,570
_3694
HP15_3695: HP15_3695 - lipoprotein, at 3,897,609 to 3,898,169
_3695
HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237
_3696
Position (kb)
3896
3897
3898 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3895.598 kb on + strand, within HP15_3693 at 3895.604 kb on + strand, within HP15_3693 at 3895.668 kb on + strand, within HP15_3693 at 3895.684 kb on + strand, within HP15_3693 at 3895.692 kb on - strand, within HP15_3693 at 3895.692 kb on - strand, within HP15_3693 at 3895.801 kb on - strand, within HP15_3693 at 3895.877 kb on + strand, within HP15_3693 at 3895.910 kb on + strand, within HP15_3693 at 3895.995 kb on - strand, within HP15_3693 at 3896.016 kb on + strand, within HP15_3693 at 3896.054 kb on - strand, within HP15_3693 at 3896.099 kb on - strand, within HP15_3693 at 3896.465 kb on - strand at 3896.524 kb on - strand at 3896.552 kb on + strand at 3896.560 kb on - strand at 3896.562 kb on + strand at 3896.571 kb on - strand at 3896.603 kb on - strand, within HP15_3694 at 3896.637 kb on + strand, within HP15_3694 at 3896.637 kb on + strand, within HP15_3694 at 3896.715 kb on - strand, within HP15_3694 at 3896.786 kb on - strand, within HP15_3694 at 3896.788 kb on + strand, within HP15_3694 at 3896.836 kb on + strand, within HP15_3694 at 3896.892 kb on - strand, within HP15_3694 at 3896.912 kb on + strand, within HP15_3694 at 3896.930 kb on + strand, within HP15_3694 at 3896.938 kb on - strand, within HP15_3694 at 3896.975 kb on + strand, within HP15_3694 at 3896.976 kb on - strand, within HP15_3694 at 3896.987 kb on + strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3897.043 kb on - strand, within HP15_3694 at 3897.100 kb on + strand, within HP15_3694 at 3897.118 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.246 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.265 kb on - strand, within HP15_3694 at 3897.363 kb on + strand, within HP15_3694 at 3897.373 kb on + strand, within HP15_3694 at 3897.614 kb on - strand at 3897.677 kb on - strand, within HP15_3695 at 3897.733 kb on - strand, within HP15_3695 at 3897.830 kb on + strand, within HP15_3695 at 3897.867 kb on - strand, within HP15_3695 at 3897.887 kb on + strand, within HP15_3695 at 3897.913 kb on - strand, within HP15_3695 at 3898.026 kb on + strand, within HP15_3695 at 3898.040 kb on + strand, within HP15_3695 at 3898.048 kb on - strand, within HP15_3695 at 3898.110 kb on - strand, within HP15_3695 at 3898.180 kb on - strand at 3898.180 kb on - strand at 3898.181 kb on + strand at 3898.189 kb on - strand at 3898.340 kb on + strand at 3898.389 kb on - strand, within HP15_3696 at 3898.415 kb on - strand, within HP15_3696 at 3898.476 kb on - strand, within HP15_3696 at 3898.490 kb on + strand, within HP15_3696 at 3898.495 kb on + strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 3,895,598 + HP15_3693 0.72 +0.7 3,895,604 + HP15_3693 0.72 -0.5 3,895,668 + HP15_3693 0.74 +0.5 3,895,684 + HP15_3693 0.75 +0.7 3,895,692 - HP15_3693 0.75 -0.2 3,895,692 - HP15_3693 0.75 -0.2 3,895,801 - HP15_3693 0.79 -1.0 3,895,877 + HP15_3693 0.81 +1.7 3,895,910 + HP15_3693 0.82 -0.6 3,895,995 - HP15_3693 0.85 +1.5 3,896,016 + HP15_3693 0.85 +0.4 3,896,054 - HP15_3693 0.87 -0.7 3,896,099 - HP15_3693 0.88 +2.0 3,896,465 - +0.6 3,896,524 - -0.8 3,896,552 + +0.7 3,896,560 - +0.2 3,896,562 + -0.5 3,896,571 - +2.0 3,896,603 - HP15_3694 0.12 +2.1 3,896,637 + HP15_3694 0.15 -0.3 3,896,637 + HP15_3694 0.15 -0.2 3,896,715 - HP15_3694 0.22 +0.0 3,896,786 - HP15_3694 0.28 +2.2 3,896,788 + HP15_3694 0.28 +3.7 3,896,836 + HP15_3694 0.33 +2.3 3,896,892 - HP15_3694 0.38 -0.5 3,896,912 + HP15_3694 0.40 +0.3 3,896,930 + HP15_3694 0.41 -0.4 3,896,938 - HP15_3694 0.42 +2.1 3,896,975 + HP15_3694 0.46 +1.8 3,896,976 - HP15_3694 0.46 -0.3 3,896,987 + HP15_3694 0.47 -0.3 3,896,995 - HP15_3694 0.47 -0.5 3,896,995 - HP15_3694 0.47 +1.3 3,897,043 - HP15_3694 0.52 +1.8 3,897,100 + HP15_3694 0.57 +0.4 3,897,118 - HP15_3694 0.59 -0.5 3,897,176 - HP15_3694 0.64 -0.7 3,897,176 - HP15_3694 0.64 -0.9 3,897,176 - HP15_3694 0.64 +1.0 3,897,246 + HP15_3694 0.70 +2.4 3,897,257 + HP15_3694 0.71 -0.0 3,897,257 + HP15_3694 0.71 +0.5 3,897,265 - HP15_3694 0.72 -0.6 3,897,363 + HP15_3694 0.81 -0.4 3,897,373 + HP15_3694 0.82 +0.4 3,897,614 - -0.5 3,897,677 - HP15_3695 0.12 +0.6 3,897,733 - HP15_3695 0.22 -1.1 3,897,830 + HP15_3695 0.39 +1.7 3,897,867 - HP15_3695 0.46 +0.9 3,897,887 + HP15_3695 0.50 +2.2 3,897,913 - HP15_3695 0.54 -0.1 3,898,026 + HP15_3695 0.74 -0.2 3,898,040 + HP15_3695 0.77 -0.4 3,898,048 - HP15_3695 0.78 +2.3 3,898,110 - HP15_3695 0.89 -0.6 3,898,180 - -0.2 3,898,180 - -0.5 3,898,181 + -0.2 3,898,189 - +0.5 3,898,340 + -0.1 3,898,389 - HP15_3696 0.11 +2.7 3,898,415 - HP15_3696 0.12 -1.5 3,898,476 - HP15_3696 0.15 -1.6 3,898,490 + HP15_3696 0.16 -0.9 3,898,495 + HP15_3696 0.16 -0.8 3,898,503 - HP15_3696 0.16 +1.4 3,898,503 - HP15_3696 0.16 -0.5 3,898,503 - HP15_3696 0.16 -0.9
Or see this region's nucleotide sequence