Strain Fitness in Marinobacter adhaerens HP15 around HP15_3417

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3416 and HP15_3417 overlap by 2 nucleotidesHP15_3417 and HP15_3418 are separated by 125 nucleotides HP15_3416: HP15_3416 - conserved hypothetical protein, at 3,591,027 to 3,592,301 _3416 HP15_3417: HP15_3417 - RNA methyltransferase, TrmH family, group 1, at 3,592,300 to 3,593,028 _3417 HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425 _3418 Position (kb) 3592 3593 3594Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3591.505 kb on - strand, within HP15_3416at 3591.564 kb on + strand, within HP15_3416at 3591.587 kb on + strand, within HP15_3416at 3591.733 kb on - strand, within HP15_3416at 3591.884 kb on - strand, within HP15_3416at 3591.911 kb on + strand, within HP15_3416at 3591.945 kb on + strand, within HP15_3416at 3591.950 kb on + strand, within HP15_3416at 3592.064 kb on - strand, within HP15_3416at 3592.165 kb on - strand, within HP15_3416at 3592.258 kb on - strandat 3592.272 kb on + strandat 3592.311 kb on - strandat 3592.358 kb on + strandat 3592.358 kb on + strandat 3592.387 kb on + strand, within HP15_3417at 3592.411 kb on + strand, within HP15_3417at 3592.441 kb on + strand, within HP15_3417at 3592.467 kb on - strand, within HP15_3417at 3592.516 kb on - strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.571 kb on + strand, within HP15_3417at 3592.579 kb on - strand, within HP15_3417at 3592.617 kb on - strand, within HP15_3417at 3592.627 kb on - strand, within HP15_3417at 3592.664 kb on - strand, within HP15_3417at 3592.684 kb on + strand, within HP15_3417at 3592.728 kb on - strand, within HP15_3417at 3592.817 kb on + strand, within HP15_3417at 3592.840 kb on + strand, within HP15_3417at 3592.847 kb on + strand, within HP15_3417at 3592.863 kb on + strand, within HP15_3417at 3592.866 kb on - strand, within HP15_3417at 3592.912 kb on + strand, within HP15_3417at 3592.945 kb on - strand, within HP15_3417at 3592.953 kb on + strand, within HP15_3417at 3592.993 kb on - strandat 3593.022 kb on - strandat 3593.034 kb on + strandat 3593.052 kb on - strandat 3593.066 kb on - strandat 3593.104 kb on - strandat 3593.258 kb on + strandat 3593.297 kb on + strand, within HP15_3418at 3593.358 kb on + strand, within HP15_3418at 3593.479 kb on - strand, within HP15_3418at 3593.512 kb on + strand, within HP15_3418at 3593.547 kb on + strand, within HP15_3418at 3593.596 kb on + strand, within HP15_3418at 3593.617 kb on - strand, within HP15_3418at 3593.641 kb on + strand, within HP15_3418at 3593.683 kb on - strand, within HP15_3418at 3593.774 kb on + strand, within HP15_3418at 3593.969 kb on + strand, within HP15_3418at 3594.006 kb on + strand, within HP15_3418

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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3,591,505 - HP15_3416 0.37 +0.1
3,591,564 + HP15_3416 0.42 +0.1
3,591,587 + HP15_3416 0.44 -0.2
3,591,733 - HP15_3416 0.55 -0.0
3,591,884 - HP15_3416 0.67 +2.0
3,591,911 + HP15_3416 0.69 -1.3
3,591,945 + HP15_3416 0.72 -0.1
3,591,950 + HP15_3416 0.72 +2.1
3,592,064 - HP15_3416 0.81 +2.1
3,592,165 - HP15_3416 0.89 -1.8
3,592,258 - +0.5
3,592,272 + -0.1
3,592,311 - -0.9
3,592,358 + -0.3
3,592,358 + +2.1
3,592,387 + HP15_3417 0.12 +1.9
3,592,411 + HP15_3417 0.15 -0.1
3,592,441 + HP15_3417 0.19 -0.0
3,592,467 - HP15_3417 0.23 +2.1
3,592,516 - HP15_3417 0.30 +2.4
3,592,571 + HP15_3417 0.37 +3.0
3,592,571 + HP15_3417 0.37 +0.4
3,592,571 + HP15_3417 0.37 -0.1
3,592,579 - HP15_3417 0.38 -0.1
3,592,617 - HP15_3417 0.43 +2.5
3,592,627 - HP15_3417 0.45 -0.4
3,592,664 - HP15_3417 0.50 +2.1
3,592,684 + HP15_3417 0.53 -0.3
3,592,728 - HP15_3417 0.59 -0.4
3,592,817 + HP15_3417 0.71 +0.1
3,592,840 + HP15_3417 0.74 +2.2
3,592,847 + HP15_3417 0.75 +2.2
3,592,863 + HP15_3417 0.77 +0.1
3,592,866 - HP15_3417 0.78 -0.4
3,592,912 + HP15_3417 0.84 -1.1
3,592,945 - HP15_3417 0.88 +0.9
3,592,953 + HP15_3417 0.90 +0.3
3,592,993 - -1.2
3,593,022 - +0.6
3,593,034 + +0.2
3,593,052 - +0.7
3,593,066 - -0.2
3,593,104 - +0.4
3,593,258 + +2.0
3,593,297 + HP15_3418 0.11 +0.2
3,593,358 + HP15_3418 0.16 -0.1
3,593,479 - HP15_3418 0.26 +1.5
3,593,512 + HP15_3418 0.28 -0.4
3,593,547 + HP15_3418 0.31 -0.4
3,593,596 + HP15_3418 0.35 +1.8
3,593,617 - HP15_3418 0.36 +2.2
3,593,641 + HP15_3418 0.38 -0.3
3,593,683 - HP15_3418 0.42 +2.2
3,593,774 + HP15_3418 0.49 +0.2
3,593,969 + HP15_3418 0.64 -0.9
3,594,006 + HP15_3418 0.67 +0.2

Or see this region's nucleotide sequence