Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3282 and HP15_3283 overlap by 4 nucleotides HP15_3283 and HP15_3284 are separated by 25 nucleotides HP15_3284 and HP15_3285 overlap by 4 nucleotides
HP15_3282: HP15_3282 - aminoglycoside phosphotransferase, at 3,440,920 to 3,441,978
_3282
HP15_3283: HP15_3283 - nucleotidyltransferase family protein, at 3,441,975 to 3,442,673
_3283
HP15_3284: HP15_3284 - DnaJ-like membrane chaperone protein, at 3,442,699 to 3,443,421
_3284
HP15_3285: HP15_3285 - conserved hypothetical protein, secreted, at 3,443,418 to 3,444,374
_3285
Position (kb)
3442
3443
3444 Strain fitness (log2 ratio)
-1
0
1
2 at 3441.700 kb on + strand, within HP15_3282 at 3441.747 kb on + strand, within HP15_3282 at 3442.750 kb on - strand at 3442.881 kb on + strand, within HP15_3284 at 3442.881 kb on + strand, within HP15_3284 at 3442.889 kb on - strand, within HP15_3284 at 3443.055 kb on + strand, within HP15_3284 at 3443.056 kb on - strand, within HP15_3284 at 3443.076 kb on + strand, within HP15_3284 at 3443.167 kb on + strand, within HP15_3284 at 3443.174 kb on - strand, within HP15_3284 at 3443.320 kb on + strand, within HP15_3284 at 3443.339 kb on + strand, within HP15_3284 at 3443.521 kb on - strand, within HP15_3285 at 3443.598 kb on - strand, within HP15_3285 at 3443.664 kb on - strand, within HP15_3285 at 3443.674 kb on + strand, within HP15_3285 at 3443.677 kb on - strand, within HP15_3285 at 3443.679 kb on + strand, within HP15_3285 at 3443.679 kb on + strand, within HP15_3285 at 3443.679 kb on + strand, within HP15_3285 at 3443.682 kb on - strand, within HP15_3285 at 3443.687 kb on - strand, within HP15_3285 at 3443.687 kb on - strand, within HP15_3285 at 3443.687 kb on - strand, within HP15_3285 at 3443.736 kb on - strand, within HP15_3285 at 3443.824 kb on - strand, within HP15_3285 at 3443.870 kb on - strand, within HP15_3285 at 3443.888 kb on - strand, within HP15_3285 at 3443.898 kb on - strand, within HP15_3285 at 3443.913 kb on + strand, within HP15_3285 at 3443.929 kb on + strand, within HP15_3285 at 3444.009 kb on - strand, within HP15_3285 at 3444.057 kb on + strand, within HP15_3285 at 3444.134 kb on - strand, within HP15_3285 at 3444.144 kb on - strand, within HP15_3285 at 3444.144 kb on - strand, within HP15_3285 at 3444.154 kb on - strand, within HP15_3285 at 3444.211 kb on + strand, within HP15_3285 at 3444.211 kb on + strand, within HP15_3285 at 3444.219 kb on - strand, within HP15_3285 at 3444.219 kb on - strand, within HP15_3285 at 3444.221 kb on + strand, within HP15_3285 at 3444.289 kb on - strand at 3444.289 kb on - strand at 3444.313 kb on - strand at 3444.318 kb on - strand at 3444.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 3,441,700 + HP15_3282 0.74 +0.9 3,441,747 + HP15_3282 0.78 -0.6 3,442,750 - +0.3 3,442,881 + HP15_3284 0.25 +1.9 3,442,881 + HP15_3284 0.25 +1.7 3,442,889 - HP15_3284 0.26 -0.0 3,443,055 + HP15_3284 0.49 -0.4 3,443,056 - HP15_3284 0.49 +2.2 3,443,076 + HP15_3284 0.52 +1.1 3,443,167 + HP15_3284 0.65 -0.7 3,443,174 - HP15_3284 0.66 +2.5 3,443,320 + HP15_3284 0.86 -0.4 3,443,339 + HP15_3284 0.89 -0.3 3,443,521 - HP15_3285 0.11 +1.0 3,443,598 - HP15_3285 0.19 -0.1 3,443,664 - HP15_3285 0.26 -0.3 3,443,674 + HP15_3285 0.27 -0.4 3,443,677 - HP15_3285 0.27 -1.1 3,443,679 + HP15_3285 0.27 +1.9 3,443,679 + HP15_3285 0.27 +0.5 3,443,679 + HP15_3285 0.27 +2.3 3,443,682 - HP15_3285 0.28 +0.6 3,443,687 - HP15_3285 0.28 +2.1 3,443,687 - HP15_3285 0.28 +1.3 3,443,687 - HP15_3285 0.28 +0.2 3,443,736 - HP15_3285 0.33 +2.4 3,443,824 - HP15_3285 0.42 +0.2 3,443,870 - HP15_3285 0.47 -0.4 3,443,888 - HP15_3285 0.49 +0.2 3,443,898 - HP15_3285 0.50 -0.6 3,443,913 + HP15_3285 0.52 +2.5 3,443,929 + HP15_3285 0.53 +0.3 3,444,009 - HP15_3285 0.62 -0.3 3,444,057 + HP15_3285 0.67 +1.0 3,444,134 - HP15_3285 0.75 -0.4 3,444,144 - HP15_3285 0.76 +1.0 3,444,144 - HP15_3285 0.76 -0.8 3,444,154 - HP15_3285 0.77 +2.0 3,444,211 + HP15_3285 0.83 +2.2 3,444,211 + HP15_3285 0.83 +0.8 3,444,219 - HP15_3285 0.84 -0.2 3,444,219 - HP15_3285 0.84 -0.2 3,444,221 + HP15_3285 0.84 +0.3 3,444,289 - -0.1 3,444,289 - +2.2 3,444,313 - +1.6 3,444,318 - +2.1 3,444,323 - -0.6
Or see this region's nucleotide sequence