Strain Fitness in Marinobacter adhaerens HP15 around HP15_2718

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2716 and HP15_2717 are separated by 1 nucleotidesHP15_2717 and HP15_2718 are separated by 219 nucleotidesHP15_2718 and HP15_2719 are separated by 94 nucleotides HP15_2716: HP15_2716 - lemA family domain protein, at 2,868,277 to 2,870,478 _2716 HP15_2717: HP15_2717 - enoyl-CoA hydratase, at 2,870,480 to 2,871,178 _2717 HP15_2718: HP15_2718 - transcriptional regulator, LysR family protein, at 2,871,398 to 2,872,288 _2718 HP15_2719: HP15_2719 - transmembrane efflux protein, at 2,872,383 to 2,873,555 _2719 Position (kb) 2871 2872 2873Strain fitness (log2 ratio) -1 0 1 2 3at 2870.541 kb on - strandat 2870.553 kb on + strand, within HP15_2717at 2870.639 kb on - strand, within HP15_2717at 2870.776 kb on - strand, within HP15_2717at 2870.849 kb on - strand, within HP15_2717at 2870.932 kb on + strand, within HP15_2717at 2870.943 kb on + strand, within HP15_2717at 2870.951 kb on - strand, within HP15_2717at 2870.951 kb on - strand, within HP15_2717at 2871.016 kb on - strand, within HP15_2717at 2871.050 kb on - strand, within HP15_2717at 2871.050 kb on - strand, within HP15_2717at 2871.050 kb on - strand, within HP15_2717at 2871.050 kb on - strand, within HP15_2717at 2871.072 kb on + strand, within HP15_2717at 2871.072 kb on + strand, within HP15_2717at 2871.181 kb on + strandat 2871.187 kb on - strandat 2871.189 kb on - strandat 2871.190 kb on - strandat 2871.296 kb on + strandat 2871.303 kb on + strandat 2871.304 kb on - strandat 2871.323 kb on - strandat 2871.338 kb on + strandat 2871.445 kb on - strandat 2871.456 kb on + strandat 2871.499 kb on + strand, within HP15_2718at 2871.540 kb on - strand, within HP15_2718at 2871.586 kb on - strand, within HP15_2718at 2871.620 kb on + strand, within HP15_2718at 2871.622 kb on + strand, within HP15_2718at 2871.627 kb on + strand, within HP15_2718at 2871.649 kb on + strand, within HP15_2718at 2871.649 kb on + strand, within HP15_2718at 2871.663 kb on + strand, within HP15_2718at 2871.993 kb on + strand, within HP15_2718at 2871.993 kb on + strand, within HP15_2718at 2872.001 kb on - strand, within HP15_2718at 2872.001 kb on - strand, within HP15_2718at 2872.002 kb on - strand, within HP15_2718at 2872.044 kb on - strand, within HP15_2718at 2872.145 kb on + strand, within HP15_2718at 2872.228 kb on - strandat 2872.235 kb on + strandat 2872.344 kb on + strandat 2872.457 kb on + strandat 2872.465 kb on - strandat 2872.493 kb on + strandat 2872.493 kb on + strandat 2872.525 kb on + strand, within HP15_2719at 2872.533 kb on - strand, within HP15_2719at 2872.588 kb on + strand, within HP15_2719at 2872.590 kb on + strand, within HP15_2719at 2872.621 kb on + strand, within HP15_2719at 2872.757 kb on + strand, within HP15_2719at 2872.802 kb on + strand, within HP15_2719at 2872.802 kb on + strand, within HP15_2719at 2872.867 kb on - strand, within HP15_2719at 2872.903 kb on - strand, within HP15_2719at 2872.960 kb on + strand, within HP15_2719at 2872.969 kb on - strand, within HP15_2719at 2873.000 kb on + strand, within HP15_2719at 2873.111 kb on + strand, within HP15_2719at 2873.119 kb on - strand, within HP15_2719at 2873.123 kb on + strand, within HP15_2719at 2873.167 kb on + strand, within HP15_2719at 2873.167 kb on + strand, within HP15_2719at 2873.168 kb on + strand, within HP15_2719at 2873.177 kb on + strand, within HP15_2719at 2873.179 kb on + strand, within HP15_2719at 2873.179 kb on + strand, within HP15_2719at 2873.187 kb on - strand, within HP15_2719at 2873.206 kb on + strand, within HP15_2719

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,870,541 - -1.2
2,870,553 + HP15_2717 0.10 -0.5
2,870,639 - HP15_2717 0.23 -0.0
2,870,776 - HP15_2717 0.42 -1.3
2,870,849 - HP15_2717 0.53 -0.6
2,870,932 + HP15_2717 0.65 +1.5
2,870,943 + HP15_2717 0.66 -0.1
2,870,951 - HP15_2717 0.67 +1.6
2,870,951 - HP15_2717 0.67 +1.9
2,871,016 - HP15_2717 0.77 +0.3
2,871,050 - HP15_2717 0.82 -0.7
2,871,050 - HP15_2717 0.82 +2.0
2,871,050 - HP15_2717 0.82 +2.3
2,871,050 - HP15_2717 0.82 +1.5
2,871,072 + HP15_2717 0.85 -0.7
2,871,072 + HP15_2717 0.85 -0.0
2,871,181 + -0.2
2,871,187 - +2.4
2,871,189 - +1.8
2,871,190 - -0.1
2,871,296 + +0.3
2,871,303 + +0.9
2,871,304 - -0.3
2,871,323 - +2.5
2,871,338 + -0.4
2,871,445 - +1.8
2,871,456 + +1.8
2,871,499 + HP15_2718 0.11 -0.6
2,871,540 - HP15_2718 0.16 -0.3
2,871,586 - HP15_2718 0.21 -1.0
2,871,620 + HP15_2718 0.25 +2.0
2,871,622 + HP15_2718 0.25 -0.9
2,871,627 + HP15_2718 0.26 -0.4
2,871,649 + HP15_2718 0.28 -0.5
2,871,649 + HP15_2718 0.28 -1.1
2,871,663 + HP15_2718 0.30 +0.8
2,871,993 + HP15_2718 0.67 -0.1
2,871,993 + HP15_2718 0.67 +1.2
2,872,001 - HP15_2718 0.68 -0.2
2,872,001 - HP15_2718 0.68 +1.2
2,872,002 - HP15_2718 0.68 +1.6
2,872,044 - HP15_2718 0.73 -1.1
2,872,145 + HP15_2718 0.84 -0.7
2,872,228 - +0.3
2,872,235 + -0.7
2,872,344 + -0.7
2,872,457 + -0.7
2,872,465 - +0.4
2,872,493 + -0.7
2,872,493 + +1.2
2,872,525 + HP15_2719 0.12 +0.4
2,872,533 - HP15_2719 0.13 -1.1
2,872,588 + HP15_2719 0.17 +0.2
2,872,590 + HP15_2719 0.18 +2.2
2,872,621 + HP15_2719 0.20 +0.1
2,872,757 + HP15_2719 0.32 +1.6
2,872,802 + HP15_2719 0.36 +2.7
2,872,802 + HP15_2719 0.36 +1.2
2,872,867 - HP15_2719 0.41 -0.5
2,872,903 - HP15_2719 0.44 +3.0
2,872,960 + HP15_2719 0.49 +1.1
2,872,969 - HP15_2719 0.50 +2.1
2,873,000 + HP15_2719 0.53 -0.2
2,873,111 + HP15_2719 0.62 +0.3
2,873,119 - HP15_2719 0.63 +2.9
2,873,123 + HP15_2719 0.63 -1.2
2,873,167 + HP15_2719 0.67 -0.1
2,873,167 + HP15_2719 0.67 -1.5
2,873,168 + HP15_2719 0.67 -0.2
2,873,177 + HP15_2719 0.68 -0.8
2,873,179 + HP15_2719 0.68 -0.6
2,873,179 + HP15_2719 0.68 -0.2
2,873,187 - HP15_2719 0.69 +0.0
2,873,206 + HP15_2719 0.70 -0.5

Or see this region's nucleotide sequence