Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2358 and HP15_2359 are separated by 123 nucleotides HP15_2359 and HP15_2360 are separated by 227 nucleotides HP15_2360 and HP15_2361 are separated by 282 nucleotides
HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538
_2358
HP15_2359: HP15_2359 - chaperonin Cpn10, at 2,485,662 to 2,485,916
_2359
HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692
_2360
HP15_2361: HP15_2361 - 3-oxoacyl-(acyl carrier protein) reductase, at 2,486,975 to 2,487,736
_2361
Position (kb)
2486
2487 Strain fitness (log2 ratio)
-1
0
1
2 at 2486.217 kb on - strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.338 kb on - strand, within HP15_2360 at 2486.601 kb on + strand, within HP15_2360 at 2486.705 kb on + strand at 2486.871 kb on - strand at 2486.927 kb on - strand at 2487.015 kb on + strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.052 kb on + strand, within HP15_2361 at 2487.053 kb on - strand, within HP15_2361 at 2487.076 kb on + strand, within HP15_2361 at 2487.220 kb on + strand, within HP15_2361 at 2487.273 kb on + strand, within HP15_2361 at 2487.298 kb on - strand, within HP15_2361 at 2487.313 kb on - strand at 2487.333 kb on + strand, within HP15_2361 at 2487.341 kb on - strand, within HP15_2361 at 2487.470 kb on + strand, within HP15_2361 at 2487.482 kb on + strand, within HP15_2361 at 2487.494 kb on + strand, within HP15_2361 at 2487.507 kb on - strand, within HP15_2361 at 2487.631 kb on + strand, within HP15_2361
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,486,217 - HP15_2360 0.13 -0.3 2,486,330 + HP15_2360 0.34 +1.7 2,486,330 + HP15_2360 0.34 +0.2 2,486,338 - HP15_2360 0.35 -1.3 2,486,601 + HP15_2360 0.83 -0.3 2,486,705 + +1.9 2,486,871 - +1.0 2,486,927 - -0.4 2,487,015 + -1.7 2,487,046 - +0.3 2,487,046 - -0.6 2,487,046 - -0.1 2,487,046 - -0.1 2,487,052 + HP15_2361 0.10 +2.2 2,487,053 - HP15_2361 0.10 -0.7 2,487,076 + HP15_2361 0.13 -0.7 2,487,220 + HP15_2361 0.32 +2.1 2,487,273 + HP15_2361 0.39 -0.5 2,487,298 - HP15_2361 0.42 -0.9 2,487,313 - +1.6 2,487,333 + HP15_2361 0.47 -0.5 2,487,341 - HP15_2361 0.48 +2.2 2,487,470 + HP15_2361 0.65 +0.1 2,487,482 + HP15_2361 0.67 +1.8 2,487,494 + HP15_2361 0.68 +2.0 2,487,507 - HP15_2361 0.70 -0.7 2,487,631 + HP15_2361 0.86 -0.0
Or see this region's nucleotide sequence