Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2157 and HP15_2158 are separated by 213 nucleotides HP15_2158 and HP15_2159 are separated by 117 nucleotides HP15_2159 and HP15_2160 overlap by 4 nucleotides HP15_2160 and HP15_2161 are separated by 11 nucleotides
HP15_2157: HP15_2157 - methyl-accepting chemotaxis protein, at 2,263,284 to 2,265,290
_2157
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471
_2159
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
Position (kb)
2265
2266
2267
2268 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2264.593 kb on + strand, within HP15_2157 at 2264.745 kb on - strand, within HP15_2157 at 2264.790 kb on - strand, within HP15_2157 at 2264.806 kb on - strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.943 kb on + strand, within HP15_2157 at 2264.946 kb on - strand, within HP15_2157 at 2264.964 kb on + strand, within HP15_2157 at 2265.215 kb on + strand at 2265.354 kb on + strand at 2265.370 kb on + strand at 2265.414 kb on + strand at 2265.429 kb on + strand at 2265.439 kb on + strand at 2265.444 kb on + strand at 2265.612 kb on + strand at 2265.622 kb on - strand at 2265.793 kb on - strand, within HP15_2158 at 2265.803 kb on + strand, within HP15_2158 at 2265.833 kb on + strand, within HP15_2158 at 2265.987 kb on - strand, within HP15_2158 at 2266.152 kb on + strand, within HP15_2158 at 2266.163 kb on + strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.214 kb on + strand, within HP15_2158 at 2266.244 kb on - strand, within HP15_2158 at 2266.280 kb on - strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.372 kb on - strand, within HP15_2158 at 2266.407 kb on - strand, within HP15_2158 at 2266.421 kb on - strand, within HP15_2158 at 2266.529 kb on + strand, within HP15_2158 at 2266.542 kb on + strand, within HP15_2158 at 2266.580 kb on - strand, within HP15_2158 at 2266.585 kb on + strand, within HP15_2158 at 2266.597 kb on + strand, within HP15_2158 at 2266.606 kb on + strand, within HP15_2158 at 2266.657 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.814 kb on - strand, within HP15_2158 at 2266.838 kb on + strand, within HP15_2158 at 2267.089 kb on + strand at 2267.097 kb on - strand at 2267.119 kb on + strand at 2267.161 kb on + strand at 2267.210 kb on + strand at 2267.247 kb on + strand at 2267.571 kb on + strand, within HP15_2160 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,264,593 + HP15_2157 0.65 -0.2 2,264,745 - HP15_2157 0.73 +1.9 2,264,790 - HP15_2157 0.75 +2.9 2,264,806 - HP15_2157 0.76 +1.9 2,264,840 + HP15_2157 0.78 -0.5 2,264,840 + HP15_2157 0.78 -0.3 2,264,943 + HP15_2157 0.83 +2.1 2,264,946 - HP15_2157 0.83 -0.2 2,264,964 + HP15_2157 0.84 -0.8 2,265,215 + +2.2 2,265,354 + -0.7 2,265,370 + +2.5 2,265,414 + -0.3 2,265,429 + +2.2 2,265,439 + +1.8 2,265,444 + -0.3 2,265,612 + -0.7 2,265,622 - +1.8 2,265,793 - HP15_2158 0.17 +1.6 2,265,803 + HP15_2158 0.17 -0.3 2,265,833 + HP15_2158 0.19 +2.6 2,265,987 - HP15_2158 0.28 -0.7 2,266,152 + HP15_2158 0.37 -1.6 2,266,163 + HP15_2158 0.38 -0.7 2,266,206 - HP15_2158 0.40 +0.1 2,266,206 - HP15_2158 0.40 -0.2 2,266,206 - HP15_2158 0.40 -0.4 2,266,214 + HP15_2158 0.41 +0.0 2,266,244 - HP15_2158 0.42 +0.5 2,266,280 - HP15_2158 0.45 +2.2 2,266,354 + HP15_2158 0.49 +2.3 2,266,354 + HP15_2158 0.49 +0.4 2,266,354 + HP15_2158 0.49 -0.0 2,266,372 - HP15_2158 0.50 -1.3 2,266,407 - HP15_2158 0.52 -0.9 2,266,421 - HP15_2158 0.53 -0.3 2,266,529 + HP15_2158 0.59 -0.5 2,266,542 + HP15_2158 0.60 +1.1 2,266,580 - HP15_2158 0.62 +0.5 2,266,585 + HP15_2158 0.62 +0.0 2,266,597 + HP15_2158 0.63 +1.5 2,266,606 + HP15_2158 0.63 +1.9 2,266,657 + HP15_2158 0.66 -0.3 2,266,721 + HP15_2158 0.70 +0.9 2,266,721 + HP15_2158 0.70 -0.3 2,266,814 - HP15_2158 0.75 -0.3 2,266,838 + HP15_2158 0.77 -1.0 2,267,089 + -0.3 2,267,097 - +0.3 2,267,119 + -1.0 2,267,161 + -1.7 2,267,210 + -0.8 2,267,247 + +0.9 2,267,571 + HP15_2160 0.37 -1.5 2,267,640 + HP15_2160 0.62 -0.1 2,267,695 + HP15_2160 0.82 -0.5 2,267,764 + -1.3 2,267,801 + -0.4 2,267,877 + HP15_2161 0.15 +2.1 2,267,954 + HP15_2161 0.25 +0.1 2,268,119 + HP15_2161 0.45 -0.1
Or see this region's nucleotide sequence