Strain Fitness in Marinobacter adhaerens HP15 around HP15_2158

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2157 and HP15_2158 are separated by 213 nucleotidesHP15_2158 and HP15_2159 are separated by 117 nucleotidesHP15_2159 and HP15_2160 overlap by 4 nucleotidesHP15_2160 and HP15_2161 are separated by 11 nucleotides HP15_2157: HP15_2157 - methyl-accepting chemotaxis protein, at 2,263,284 to 2,265,290 _2157 HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246 _2158 HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471 _2159 HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743 _2160 HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564 _2161 Position (kb) 2265 2266 2267 2268Strain fitness (log2 ratio) -1 0 1 2 3at 2264.593 kb on + strand, within HP15_2157at 2264.745 kb on - strand, within HP15_2157at 2264.790 kb on - strand, within HP15_2157at 2264.806 kb on - strand, within HP15_2157at 2264.840 kb on + strand, within HP15_2157at 2264.840 kb on + strand, within HP15_2157at 2264.943 kb on + strand, within HP15_2157at 2264.946 kb on - strand, within HP15_2157at 2264.964 kb on + strand, within HP15_2157at 2265.215 kb on + strandat 2265.354 kb on + strandat 2265.370 kb on + strandat 2265.414 kb on + strandat 2265.429 kb on + strandat 2265.439 kb on + strandat 2265.444 kb on + strandat 2265.612 kb on + strandat 2265.622 kb on - strandat 2265.793 kb on - strand, within HP15_2158at 2265.803 kb on + strand, within HP15_2158at 2265.833 kb on + strand, within HP15_2158at 2265.987 kb on - strand, within HP15_2158at 2266.152 kb on + strand, within HP15_2158at 2266.163 kb on + strand, within HP15_2158at 2266.206 kb on - strand, within HP15_2158at 2266.206 kb on - strand, within HP15_2158at 2266.206 kb on - strand, within HP15_2158at 2266.214 kb on + strand, within HP15_2158at 2266.244 kb on - strand, within HP15_2158at 2266.280 kb on - strand, within HP15_2158at 2266.354 kb on + strand, within HP15_2158at 2266.354 kb on + strand, within HP15_2158at 2266.354 kb on + strand, within HP15_2158at 2266.372 kb on - strand, within HP15_2158at 2266.407 kb on - strand, within HP15_2158at 2266.421 kb on - strand, within HP15_2158at 2266.529 kb on + strand, within HP15_2158at 2266.542 kb on + strand, within HP15_2158at 2266.580 kb on - strand, within HP15_2158at 2266.585 kb on + strand, within HP15_2158at 2266.597 kb on + strand, within HP15_2158at 2266.606 kb on + strand, within HP15_2158at 2266.657 kb on + strand, within HP15_2158at 2266.721 kb on + strand, within HP15_2158at 2266.721 kb on + strand, within HP15_2158at 2266.814 kb on - strand, within HP15_2158at 2266.838 kb on + strand, within HP15_2158at 2267.089 kb on + strandat 2267.097 kb on - strandat 2267.119 kb on + strandat 2267.161 kb on + strandat 2267.210 kb on + strandat 2267.247 kb on + strandat 2267.571 kb on + strand, within HP15_2160at 2267.640 kb on + strand, within HP15_2160at 2267.695 kb on + strand, within HP15_2160at 2267.764 kb on + strandat 2267.801 kb on + strandat 2267.877 kb on + strand, within HP15_2161at 2267.954 kb on + strand, within HP15_2161at 2268.119 kb on + strand, within HP15_2161

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,264,593 + HP15_2157 0.65 -0.2
2,264,745 - HP15_2157 0.73 +1.9
2,264,790 - HP15_2157 0.75 +2.9
2,264,806 - HP15_2157 0.76 +1.9
2,264,840 + HP15_2157 0.78 -0.5
2,264,840 + HP15_2157 0.78 -0.3
2,264,943 + HP15_2157 0.83 +2.1
2,264,946 - HP15_2157 0.83 -0.2
2,264,964 + HP15_2157 0.84 -0.8
2,265,215 + +2.2
2,265,354 + -0.7
2,265,370 + +2.5
2,265,414 + -0.3
2,265,429 + +2.2
2,265,439 + +1.8
2,265,444 + -0.3
2,265,612 + -0.7
2,265,622 - +1.8
2,265,793 - HP15_2158 0.17 +1.6
2,265,803 + HP15_2158 0.17 -0.3
2,265,833 + HP15_2158 0.19 +2.6
2,265,987 - HP15_2158 0.28 -0.7
2,266,152 + HP15_2158 0.37 -1.6
2,266,163 + HP15_2158 0.38 -0.7
2,266,206 - HP15_2158 0.40 +0.1
2,266,206 - HP15_2158 0.40 -0.2
2,266,206 - HP15_2158 0.40 -0.4
2,266,214 + HP15_2158 0.41 +0.0
2,266,244 - HP15_2158 0.42 +0.5
2,266,280 - HP15_2158 0.45 +2.2
2,266,354 + HP15_2158 0.49 +2.3
2,266,354 + HP15_2158 0.49 +0.4
2,266,354 + HP15_2158 0.49 -0.0
2,266,372 - HP15_2158 0.50 -1.3
2,266,407 - HP15_2158 0.52 -0.9
2,266,421 - HP15_2158 0.53 -0.3
2,266,529 + HP15_2158 0.59 -0.5
2,266,542 + HP15_2158 0.60 +1.1
2,266,580 - HP15_2158 0.62 +0.5
2,266,585 + HP15_2158 0.62 +0.0
2,266,597 + HP15_2158 0.63 +1.5
2,266,606 + HP15_2158 0.63 +1.9
2,266,657 + HP15_2158 0.66 -0.3
2,266,721 + HP15_2158 0.70 +0.9
2,266,721 + HP15_2158 0.70 -0.3
2,266,814 - HP15_2158 0.75 -0.3
2,266,838 + HP15_2158 0.77 -1.0
2,267,089 + -0.3
2,267,097 - +0.3
2,267,119 + -1.0
2,267,161 + -1.7
2,267,210 + -0.8
2,267,247 + +0.9
2,267,571 + HP15_2160 0.37 -1.5
2,267,640 + HP15_2160 0.62 -0.1
2,267,695 + HP15_2160 0.82 -0.5
2,267,764 + -1.3
2,267,801 + -0.4
2,267,877 + HP15_2161 0.15 +2.1
2,267,954 + HP15_2161 0.25 +0.1
2,268,119 + HP15_2161 0.45 -0.1

Or see this region's nucleotide sequence