Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2150 and HP15_2151 are separated by 12 nucleotides HP15_2151 and HP15_2152 are separated by 21 nucleotides
HP15_2150: HP15_2150 - ATPase, at 2,252,720 to 2,255,185
_2150
HP15_2151: HP15_2151 - conserved hypothetical protein, at 2,255,198 to 2,256,757
_2151
HP15_2152: HP15_2152 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 2,256,779 to 2,257,744
_2152
Position (kb)
2255
2256
2257 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2254.238 kb on - strand, within HP15_2150 at 2254.251 kb on + strand, within HP15_2150 at 2254.259 kb on - strand, within HP15_2150 at 2254.276 kb on + strand, within HP15_2150 at 2254.288 kb on + strand, within HP15_2150 at 2254.392 kb on + strand, within HP15_2150 at 2254.392 kb on + strand, within HP15_2150 at 2254.404 kb on + strand, within HP15_2150 at 2254.480 kb on - strand, within HP15_2150 at 2254.485 kb on - strand, within HP15_2150 at 2254.507 kb on - strand, within HP15_2150 at 2254.515 kb on + strand, within HP15_2150 at 2254.515 kb on + strand, within HP15_2150 at 2254.538 kb on + strand, within HP15_2150 at 2254.538 kb on + strand, within HP15_2150 at 2254.576 kb on - strand, within HP15_2150 at 2254.671 kb on - strand, within HP15_2150 at 2254.826 kb on - strand, within HP15_2150 at 2254.831 kb on - strand, within HP15_2150 at 2254.840 kb on - strand, within HP15_2150 at 2254.862 kb on - strand, within HP15_2150 at 2254.862 kb on - strand, within HP15_2150 at 2254.867 kb on - strand, within HP15_2150 at 2254.867 kb on - strand, within HP15_2150 at 2255.103 kb on + strand at 2255.104 kb on + strand at 2255.112 kb on - strand at 2255.175 kb on + strand at 2255.324 kb on + strand at 2255.359 kb on + strand, within HP15_2151 at 2255.367 kb on - strand, within HP15_2151 at 2255.383 kb on + strand, within HP15_2151 at 2255.388 kb on - strand, within HP15_2151 at 2255.426 kb on + strand, within HP15_2151 at 2255.434 kb on - strand, within HP15_2151 at 2255.465 kb on - strand, within HP15_2151 at 2255.596 kb on + strand, within HP15_2151 at 2255.804 kb on - strand, within HP15_2151 at 2255.859 kb on + strand, within HP15_2151 at 2255.978 kb on - strand, within HP15_2151 at 2256.007 kb on + strand, within HP15_2151 at 2256.278 kb on + strand, within HP15_2151 at 2256.322 kb on + strand, within HP15_2151 at 2256.435 kb on + strand, within HP15_2151 at 2256.467 kb on - strand, within HP15_2151 at 2256.549 kb on + strand, within HP15_2151 at 2256.582 kb on - strand, within HP15_2151 at 2256.607 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.701 kb on + strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.709 kb on - strand at 2256.781 kb on + strand at 2256.796 kb on + strand at 2256.804 kb on - strand at 2256.804 kb on - strand at 2256.804 kb on - strand at 2256.807 kb on + strand at 2256.841 kb on + strand at 2257.242 kb on + strand, within HP15_2152 at 2257.247 kb on + strand, within HP15_2152 at 2257.265 kb on - strand, within HP15_2152 at 2257.268 kb on - strand, within HP15_2152 at 2257.414 kb on - strand, within HP15_2152 at 2257.418 kb on + strand, within HP15_2152 at 2257.504 kb on + strand, within HP15_2152 at 2257.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,254,238 - HP15_2150 0.62 -0.5 2,254,251 + HP15_2150 0.62 -0.6 2,254,259 - HP15_2150 0.62 +2.2 2,254,276 + HP15_2150 0.63 +1.0 2,254,288 + HP15_2150 0.64 -0.2 2,254,392 + HP15_2150 0.68 -0.3 2,254,392 + HP15_2150 0.68 +0.8 2,254,404 + HP15_2150 0.68 +1.5 2,254,480 - HP15_2150 0.71 -0.6 2,254,485 - HP15_2150 0.72 -1.4 2,254,507 - HP15_2150 0.72 +0.4 2,254,515 + HP15_2150 0.73 +2.5 2,254,515 + HP15_2150 0.73 -0.0 2,254,538 + HP15_2150 0.74 +1.6 2,254,538 + HP15_2150 0.74 +2.4 2,254,576 - HP15_2150 0.75 +0.9 2,254,671 - HP15_2150 0.79 -0.7 2,254,826 - HP15_2150 0.85 +1.7 2,254,831 - HP15_2150 0.86 -0.4 2,254,840 - HP15_2150 0.86 -0.4 2,254,862 - HP15_2150 0.87 +1.6 2,254,862 - HP15_2150 0.87 +2.2 2,254,867 - HP15_2150 0.87 -0.4 2,254,867 - HP15_2150 0.87 -1.4 2,255,103 + -0.9 2,255,104 + +0.2 2,255,112 - +2.1 2,255,175 + -0.2 2,255,324 + +2.2 2,255,359 + HP15_2151 0.10 -1.5 2,255,367 - HP15_2151 0.11 +2.2 2,255,383 + HP15_2151 0.12 -0.6 2,255,388 - HP15_2151 0.12 -0.6 2,255,426 + HP15_2151 0.15 +1.8 2,255,434 - HP15_2151 0.15 -0.7 2,255,465 - HP15_2151 0.17 -1.4 2,255,596 + HP15_2151 0.26 -0.1 2,255,804 - HP15_2151 0.39 -0.3 2,255,859 + HP15_2151 0.42 -0.3 2,255,978 - HP15_2151 0.50 +0.3 2,256,007 + HP15_2151 0.52 +0.1 2,256,278 + HP15_2151 0.69 -0.2 2,256,322 + HP15_2151 0.72 +0.1 2,256,435 + HP15_2151 0.79 -0.5 2,256,467 - HP15_2151 0.81 +2.1 2,256,549 + HP15_2151 0.87 +0.2 2,256,582 - HP15_2151 0.89 -0.8 2,256,607 + +0.1 2,256,701 + +0.5 2,256,701 + +2.1 2,256,701 + +0.4 2,256,701 + +1.7 2,256,709 - -1.0 2,256,709 - -1.2 2,256,709 - +0.1 2,256,709 - +2.8 2,256,781 + +2.2 2,256,796 + -0.6 2,256,804 - -0.4 2,256,804 - -0.4 2,256,804 - -0.3 2,256,807 + -0.5 2,256,841 + +1.9 2,257,242 + HP15_2152 0.48 -0.4 2,257,247 + HP15_2152 0.48 -0.5 2,257,265 - HP15_2152 0.50 -0.3 2,257,268 - HP15_2152 0.51 +2.7 2,257,414 - HP15_2152 0.66 +1.7 2,257,418 + HP15_2152 0.66 +1.8 2,257,504 + HP15_2152 0.75 +0.6 2,257,704 - -1.6
Or see this region's nucleotide sequence