Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2008 and HP15_2009 overlap by 1 nucleotides HP15_2009 and HP15_2010 are separated by 268 nucleotides HP15_2010 and HP15_2011 overlap by 1 nucleotides
HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446
_2008
HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859
_2009
HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972
_2010
HP15_2011: HP15_2011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,111,972 to 2,113,150
_2011
Position (kb)
2110
2111
2112 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2109.152 kb on + strand, within HP15_2008 at 2109.269 kb on - strand, within HP15_2008 at 2109.845 kb on - strand at 2109.943 kb on + strand at 2109.951 kb on - strand at 2109.951 kb on - strand at 2110.058 kb on + strand at 2110.198 kb on + strand at 2110.206 kb on - strand at 2110.489 kb on - strand, within HP15_2010 at 2110.559 kb on + strand, within HP15_2010 at 2110.564 kb on + strand, within HP15_2010 at 2110.591 kb on + strand, within HP15_2010 at 2110.606 kb on + strand, within HP15_2010 at 2110.670 kb on - strand, within HP15_2010 at 2110.699 kb on - strand, within HP15_2010 at 2110.771 kb on + strand, within HP15_2010 at 2110.777 kb on + strand, within HP15_2010 at 2110.829 kb on - strand, within HP15_2010 at 2110.865 kb on - strand, within HP15_2010 at 2110.907 kb on - strand, within HP15_2010 at 2110.907 kb on - strand, within HP15_2010 at 2111.027 kb on + strand, within HP15_2010 at 2111.034 kb on + strand, within HP15_2010 at 2111.190 kb on + strand, within HP15_2010 at 2111.232 kb on - strand, within HP15_2010 at 2111.287 kb on + strand, within HP15_2010 at 2111.348 kb on + strand, within HP15_2010 at 2111.521 kb on - strand, within HP15_2010 at 2111.584 kb on + strand, within HP15_2010 at 2111.621 kb on + strand, within HP15_2010 at 2111.629 kb on + strand, within HP15_2010 at 2111.697 kb on - strand, within HP15_2010 at 2111.721 kb on + strand, within HP15_2010 at 2111.987 kb on - strand at 2112.175 kb on + strand, within HP15_2011 at 2112.251 kb on + strand, within HP15_2011 at 2112.268 kb on + strand, within HP15_2011 at 2112.392 kb on - strand, within HP15_2011 at 2112.403 kb on + strand, within HP15_2011 at 2112.411 kb on - strand, within HP15_2011 at 2112.411 kb on - strand, within HP15_2011 at 2112.465 kb on + strand, within HP15_2011 at 2112.475 kb on - strand, within HP15_2011 at 2112.894 kb on + strand, within HP15_2011
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,109,152 + HP15_2008 0.44 +1.2 2,109,269 - HP15_2008 0.66 +0.2 2,109,845 - -0.9 2,109,943 + +1.6 2,109,951 - -0.1 2,109,951 - -0.1 2,110,058 + -0.2 2,110,198 + +3.1 2,110,206 - +1.7 2,110,489 - HP15_2010 0.20 +1.3 2,110,559 + HP15_2010 0.23 +0.7 2,110,564 + HP15_2010 0.24 -0.3 2,110,591 + HP15_2010 0.25 -0.4 2,110,606 + HP15_2010 0.26 -0.6 2,110,670 - HP15_2010 0.29 +0.3 2,110,699 - HP15_2010 0.31 -0.6 2,110,771 + HP15_2010 0.35 -0.3 2,110,777 + HP15_2010 0.35 +0.5 2,110,829 - HP15_2010 0.38 -0.4 2,110,865 - HP15_2010 0.40 +0.4 2,110,907 - HP15_2010 0.42 -0.6 2,110,907 - HP15_2010 0.42 -0.2 2,111,027 + HP15_2010 0.49 -0.1 2,111,034 + HP15_2010 0.49 -0.7 2,111,190 + HP15_2010 0.58 -1.3 2,111,232 - HP15_2010 0.60 -1.4 2,111,287 + HP15_2010 0.63 +2.6 2,111,348 + HP15_2010 0.66 -0.2 2,111,521 - HP15_2010 0.76 -0.7 2,111,584 + HP15_2010 0.79 +0.6 2,111,621 + HP15_2010 0.81 +1.7 2,111,629 + HP15_2010 0.81 -0.4 2,111,697 - HP15_2010 0.85 +0.4 2,111,721 + HP15_2010 0.86 -1.2 2,111,987 - +0.1 2,112,175 + HP15_2011 0.17 -0.7 2,112,251 + HP15_2011 0.24 -0.7 2,112,268 + HP15_2011 0.25 +0.2 2,112,392 - HP15_2011 0.36 -1.7 2,112,403 + HP15_2011 0.37 +1.8 2,112,411 - HP15_2011 0.37 +0.3 2,112,411 - HP15_2011 0.37 +2.7 2,112,465 + HP15_2011 0.42 +0.6 2,112,475 - HP15_2011 0.43 +2.9 2,112,894 + HP15_2011 0.78 -0.4
Or see this region's nucleotide sequence