Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_201 and HP15_202 overlap by 4 nucleotides HP15_202 and HP15_203 are separated by 4 nucleotides
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528
_202
HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531
_203
HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538
_204
Position (kb) 189
190
191 Strain fitness (log2 ratio) -1
0
1
2
3 at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201 at 189.504 kb on - strand at 189.556 kb on + strand at 189.568 kb on - strand at 189.571 kb on - strand at 189.766 kb on + strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.859 kb on + strand, within HP15_202 at 189.984 kb on - strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.138 kb on + strand, within HP15_202 at 190.157 kb on + strand, within HP15_202 at 190.300 kb on - strand, within HP15_202 at 190.375 kb on - strand, within HP15_202 at 190.421 kb on - strand, within HP15_202 at 190.506 kb on + strand at 190.506 kb on + strand at 190.523 kb on + strand at 190.524 kb on - strand at 190.531 kb on + strand at 190.531 kb on - strand at 190.539 kb on - strand at 190.582 kb on + strand at 190.622 kb on + strand at 190.622 kb on + strand at 190.630 kb on - strand at 190.653 kb on - strand, within HP15_203 at 190.746 kb on + strand, within HP15_203 at 190.771 kb on + strand, within HP15_203 at 190.792 kb on + strand, within HP15_203 at 190.845 kb on + strand, within HP15_203 at 190.853 kb on - strand, within HP15_203 at 190.886 kb on - strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.931 kb on - strand, within HP15_203 at 190.931 kb on - strand, within HP15_203 at 190.967 kb on - strand, within HP15_203 at 190.992 kb on - strand, within HP15_203 at 190.994 kb on + strand, within HP15_203 at 190.994 kb on + strand, within HP15_203 at 191.164 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.275 kb on + strand, within HP15_203 at 191.281 kb on - strand, within HP15_203 at 191.281 kb on - strand, within HP15_203 at 191.299 kb on - strand, within HP15_203 at 191.308 kb on + strand, within HP15_203 at 191.311 kb on - strand, within HP15_203 at 191.418 kb on - strand, within HP15_203
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 188,634 + +2.2 188,658 + -0.1 188,684 + HP15_201 0.12 +2.0 188,956 - HP15_201 0.38 +0.1 189,013 + HP15_201 0.43 -1.3 189,013 - HP15_201 0.43 -0.7 189,021 - HP15_201 0.44 -0.7 189,166 + HP15_201 0.58 -0.6 189,166 + HP15_201 0.58 -0.4 189,174 - HP15_201 0.59 -1.0 189,174 - HP15_201 0.59 +1.2 189,221 + HP15_201 0.63 -0.6 189,239 + HP15_201 0.65 -0.3 189,293 + HP15_201 0.70 +0.0 189,325 - HP15_201 0.74 -1.1 189,338 + HP15_201 0.75 -1.0 189,344 - HP15_201 0.75 -0.7 189,393 - HP15_201 0.80 +1.9 189,441 + HP15_201 0.85 -0.9 189,504 - -0.3 189,556 + -0.0 189,568 - +2.0 189,571 - -0.5 189,766 + HP15_202 0.18 -0.6 189,774 - HP15_202 0.19 -0.7 189,774 - HP15_202 0.19 -0.3 189,859 + HP15_202 0.28 -0.2 189,984 - HP15_202 0.42 -0.4 190,057 + HP15_202 0.49 +1.8 190,057 + HP15_202 0.49 -0.2 190,065 - HP15_202 0.50 +2.2 190,065 - HP15_202 0.50 -0.6 190,138 + HP15_202 0.58 -0.1 190,157 + HP15_202 0.60 -1.0 190,300 - HP15_202 0.75 -0.2 190,375 - HP15_202 0.83 +2.3 190,421 - HP15_202 0.88 -0.4 190,506 + +2.6 190,506 + -0.7 190,523 + +2.1 190,524 - +2.0 190,531 + -0.3 190,531 - -0.6 190,539 - -0.3 190,582 + +2.1 190,622 + +2.1 190,622 + +2.7 190,630 - -0.5 190,653 - HP15_203 0.12 -0.1 190,746 + HP15_203 0.21 -0.7 190,771 + HP15_203 0.24 +3.0 190,792 + HP15_203 0.26 -0.6 190,845 + HP15_203 0.31 +2.0 190,853 - HP15_203 0.32 +2.2 190,886 - HP15_203 0.35 -0.7 190,923 + HP15_203 0.39 +2.5 190,923 + HP15_203 0.39 -0.4 190,923 + HP15_203 0.39 +0.2 190,923 + HP15_203 0.39 +2.4 190,931 - HP15_203 0.40 +1.8 190,931 - HP15_203 0.40 +1.9 190,967 - HP15_203 0.43 -1.3 190,992 - HP15_203 0.46 +2.1 190,994 + HP15_203 0.46 +1.6 190,994 + HP15_203 0.46 -0.7 191,164 + HP15_203 0.63 -0.4 191,273 + HP15_203 0.74 -0.3 191,273 + HP15_203 0.74 -0.7 191,273 + HP15_203 0.74 +1.8 191,275 + HP15_203 0.74 -0.6 191,281 - HP15_203 0.75 +0.2 191,281 - HP15_203 0.75 +2.0 191,299 - HP15_203 0.77 +2.6 191,308 + HP15_203 0.78 +2.0 191,311 - HP15_203 0.78 +1.4 191,418 - HP15_203 0.89 +2.0
Or see this region's nucleotide sequence