Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1797 and HP15_1798 are separated by 20 nucleotides HP15_1798 and HP15_1799 are separated by 231 nucleotides HP15_1799 and HP15_1800 are separated by 62 nucleotides
HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723
_1797
HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805
_1798
HP15_1799: HP15_1799 - sterol-binding domain protein, at 1,892,037 to 1,892,351
_1799
HP15_1800: HP15_1800 - conserved hypothetical protein, membrane, at 1,892,414 to 1,893,061
_1800
Position (kb)
1890
1891
1892 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1889.817 kb on - strand at 1889.931 kb on + strand, within HP15_1797 at 1889.939 kb on - strand, within HP15_1797 at 1889.958 kb on - strand, within HP15_1797 at 1890.002 kb on + strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.161 kb on + strand, within HP15_1797 at 1890.262 kb on - strand, within HP15_1797 at 1890.342 kb on - strand, within HP15_1797 at 1890.382 kb on + strand, within HP15_1797 at 1890.548 kb on + strand, within HP15_1797 at 1890.681 kb on - strand at 1890.689 kb on - strand at 1890.703 kb on - strand at 1890.910 kb on + strand, within HP15_1798 at 1890.959 kb on + strand, within HP15_1798 at 1890.995 kb on - strand, within HP15_1798 at 1891.223 kb on - strand, within HP15_1798 at 1891.311 kb on - strand, within HP15_1798 at 1891.408 kb on + strand, within HP15_1798 at 1891.413 kb on + strand, within HP15_1798 at 1891.445 kb on + strand, within HP15_1798 at 1891.479 kb on + strand, within HP15_1798 at 1891.704 kb on + strand at 1892.011 kb on - strand at 1892.098 kb on + strand, within HP15_1799 at 1892.105 kb on - strand, within HP15_1799 at 1892.105 kb on - strand, within HP15_1799 at 1892.105 kb on - strand, within HP15_1799 at 1892.140 kb on - strand, within HP15_1799 at 1892.203 kb on + strand, within HP15_1799 at 1892.211 kb on - strand, within HP15_1799 at 1892.213 kb on + strand, within HP15_1799 at 1892.283 kb on + strand, within HP15_1799 at 1892.336 kb on + strand at 1892.635 kb on - strand, within HP15_1800 at 1892.642 kb on + strand, within HP15_1800 at 1892.658 kb on - strand, within HP15_1800
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 1,889,817 - -0.3 1,889,931 + HP15_1797 0.21 +2.1 1,889,939 - HP15_1797 0.22 +0.5 1,889,958 - HP15_1797 0.24 +0.1 1,890,002 + HP15_1797 0.28 +1.5 1,890,010 - HP15_1797 0.29 -0.8 1,890,010 - HP15_1797 0.29 +1.9 1,890,161 + HP15_1797 0.44 +2.1 1,890,262 - HP15_1797 0.54 +0.2 1,890,342 - HP15_1797 0.62 +2.4 1,890,382 + HP15_1797 0.66 -0.1 1,890,548 + HP15_1797 0.82 +0.6 1,890,681 - +0.2 1,890,689 - +0.7 1,890,703 - +2.0 1,890,910 + HP15_1798 0.16 +0.2 1,890,959 + HP15_1798 0.20 -0.3 1,890,995 - HP15_1798 0.24 +2.7 1,891,223 - HP15_1798 0.45 +1.9 1,891,311 - HP15_1798 0.53 +0.2 1,891,408 + HP15_1798 0.63 -0.2 1,891,413 + HP15_1798 0.63 +2.3 1,891,445 + HP15_1798 0.66 +1.1 1,891,479 + HP15_1798 0.69 +2.0 1,891,704 + +2.0 1,892,011 - -0.5 1,892,098 + HP15_1799 0.19 -0.3 1,892,105 - HP15_1799 0.22 -0.6 1,892,105 - HP15_1799 0.22 -0.5 1,892,105 - HP15_1799 0.22 +0.8 1,892,140 - HP15_1799 0.33 -0.0 1,892,203 + HP15_1799 0.53 -0.1 1,892,211 - HP15_1799 0.55 +0.3 1,892,213 + HP15_1799 0.56 -0.6 1,892,283 + HP15_1799 0.78 +2.1 1,892,336 + -0.4 1,892,635 - HP15_1800 0.34 +2.0 1,892,642 + HP15_1800 0.35 -1.8 1,892,658 - HP15_1800 0.38 -0.5
Or see this region's nucleotide sequence