Strain Fitness in Marinobacter adhaerens HP15 around HP15_1798

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1797 and HP15_1798 are separated by 20 nucleotidesHP15_1798 and HP15_1799 are separated by 231 nucleotidesHP15_1799 and HP15_1800 are separated by 62 nucleotides HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723 _1797 HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805 _1798 HP15_1799: HP15_1799 - sterol-binding domain protein, at 1,892,037 to 1,892,351 _1799 HP15_1800: HP15_1800 - conserved hypothetical protein, membrane, at 1,892,414 to 1,893,061 _1800 Position (kb) 1890 1891 1892Strain fitness (log2 ratio) -2 -1 0 1 2at 1889.817 kb on - strandat 1889.931 kb on + strand, within HP15_1797at 1889.939 kb on - strand, within HP15_1797at 1889.958 kb on - strand, within HP15_1797at 1890.002 kb on + strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.010 kb on - strand, within HP15_1797at 1890.161 kb on + strand, within HP15_1797at 1890.262 kb on - strand, within HP15_1797at 1890.342 kb on - strand, within HP15_1797at 1890.382 kb on + strand, within HP15_1797at 1890.548 kb on + strand, within HP15_1797at 1890.681 kb on - strandat 1890.689 kb on - strandat 1890.703 kb on - strandat 1890.910 kb on + strand, within HP15_1798at 1890.959 kb on + strand, within HP15_1798at 1890.995 kb on - strand, within HP15_1798at 1891.223 kb on - strand, within HP15_1798at 1891.311 kb on - strand, within HP15_1798at 1891.408 kb on + strand, within HP15_1798at 1891.413 kb on + strand, within HP15_1798at 1891.445 kb on + strand, within HP15_1798at 1891.479 kb on + strand, within HP15_1798at 1891.704 kb on + strandat 1892.011 kb on - strandat 1892.098 kb on + strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.140 kb on - strand, within HP15_1799at 1892.203 kb on + strand, within HP15_1799at 1892.211 kb on - strand, within HP15_1799at 1892.213 kb on + strand, within HP15_1799at 1892.283 kb on + strand, within HP15_1799at 1892.336 kb on + strandat 1892.635 kb on - strand, within HP15_1800at 1892.642 kb on + strand, within HP15_1800at 1892.658 kb on - strand, within HP15_1800

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,889,817 - -0.3
1,889,931 + HP15_1797 0.21 +2.1
1,889,939 - HP15_1797 0.22 +0.5
1,889,958 - HP15_1797 0.24 +0.1
1,890,002 + HP15_1797 0.28 +1.5
1,890,010 - HP15_1797 0.29 -0.8
1,890,010 - HP15_1797 0.29 +1.9
1,890,161 + HP15_1797 0.44 +2.1
1,890,262 - HP15_1797 0.54 +0.2
1,890,342 - HP15_1797 0.62 +2.4
1,890,382 + HP15_1797 0.66 -0.1
1,890,548 + HP15_1797 0.82 +0.6
1,890,681 - +0.2
1,890,689 - +0.7
1,890,703 - +2.0
1,890,910 + HP15_1798 0.16 +0.2
1,890,959 + HP15_1798 0.20 -0.3
1,890,995 - HP15_1798 0.24 +2.7
1,891,223 - HP15_1798 0.45 +1.9
1,891,311 - HP15_1798 0.53 +0.2
1,891,408 + HP15_1798 0.63 -0.2
1,891,413 + HP15_1798 0.63 +2.3
1,891,445 + HP15_1798 0.66 +1.1
1,891,479 + HP15_1798 0.69 +2.0
1,891,704 + +2.0
1,892,011 - -0.5
1,892,098 + HP15_1799 0.19 -0.3
1,892,105 - HP15_1799 0.22 -0.6
1,892,105 - HP15_1799 0.22 -0.5
1,892,105 - HP15_1799 0.22 +0.8
1,892,140 - HP15_1799 0.33 -0.0
1,892,203 + HP15_1799 0.53 -0.1
1,892,211 - HP15_1799 0.55 +0.3
1,892,213 + HP15_1799 0.56 -0.6
1,892,283 + HP15_1799 0.78 +2.1
1,892,336 + -0.4
1,892,635 - HP15_1800 0.34 +2.0
1,892,642 + HP15_1800 0.35 -1.8
1,892,658 - HP15_1800 0.38 -0.5

Or see this region's nucleotide sequence