Strain Fitness in Marinobacter adhaerens HP15 around HP15_1752

Experiment: Urea as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1750 and HP15_1751 are separated by 57 nucleotidesHP15_1751 and HP15_1752 are separated by 228 nucleotidesHP15_1752 and HP15_1753 are separated by 28 nucleotidesHP15_1753 and HP15_1754 are separated by 10 nucleotides HP15_1750: HP15_1750 - saccharopine dehydrogenase-like protein, at 1,850,088 to 1,851,329 _1750 HP15_1751: HP15_1751 - conserved hypothetical protein, membrane, at 1,851,387 to 1,851,803 _1751 HP15_1752: HP15_1752 - conserved hypothetical protein, at 1,852,032 to 1,852,340 _1752 HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842 _1753 HP15_1754: HP15_1754 - rRNA (guanine-N1-)-methyltransferase A, predicted, at 1,852,853 to 1,853,638 _1754 Position (kb) 1852 1853Strain fitness (log2 ratio) -1 0 1 2at 1851.086 kb on - strand, within HP15_1750at 1851.142 kb on + strand, within HP15_1750at 1851.165 kb on + strand, within HP15_1750at 1851.183 kb on - strand, within HP15_1750at 1851.224 kb on + strandat 1851.232 kb on - strandat 1851.232 kb on - strandat 1851.483 kb on + strand, within HP15_1751at 1851.640 kb on - strand, within HP15_1751at 1851.658 kb on + strand, within HP15_1751at 1851.658 kb on + strand, within HP15_1751at 1851.713 kb on + strand, within HP15_1751at 1851.764 kb on - strandat 1851.833 kb on + strandat 1851.960 kb on + strandat 1851.960 kb on + strandat 1851.968 kb on - strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.029 kb on + strandat 1852.037 kb on - strandat 1852.037 kb on - strandat 1852.078 kb on + strand, within HP15_1752at 1852.078 kb on + strand, within HP15_1752at 1852.078 kb on + strand, within HP15_1752at 1852.103 kb on - strand, within HP15_1752at 1852.180 kb on + strand, within HP15_1752at 1852.212 kb on + strand, within HP15_1752at 1852.504 kb on - strand, within HP15_1753at 1852.522 kb on - strand, within HP15_1753at 1852.656 kb on - strand, within HP15_1753at 1852.693 kb on + strand, within HP15_1753at 1852.815 kb on + strandat 1852.816 kb on + strandat 1852.823 kb on - strandat 1852.824 kb on - strandat 1852.871 kb on + strandat 1852.879 kb on - strandat 1852.907 kb on + strandat 1852.938 kb on - strand, within HP15_1754at 1852.967 kb on - strand, within HP15_1754at 1852.993 kb on - strand, within HP15_1754at 1853.066 kb on + strand, within HP15_1754at 1853.274 kb on + strand, within HP15_1754

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
remove
1,851,086 - HP15_1750 0.80 +2.2
1,851,142 + HP15_1750 0.85 -1.2
1,851,165 + HP15_1750 0.87 -0.5
1,851,183 - HP15_1750 0.88 -0.2
1,851,224 + +1.5
1,851,232 - +2.0
1,851,232 - +2.3
1,851,483 + HP15_1751 0.23 -0.5
1,851,640 - HP15_1751 0.61 +1.9
1,851,658 + HP15_1751 0.65 +0.7
1,851,658 + HP15_1751 0.65 -0.2
1,851,713 + HP15_1751 0.78 -0.4
1,851,764 - +0.3
1,851,833 + -0.7
1,851,960 + -0.7
1,851,960 + -0.2
1,851,968 - -0.2
1,852,029 + -0.6
1,852,029 + -0.6
1,852,029 + -0.2
1,852,029 + -0.7
1,852,037 - +0.2
1,852,037 - -0.6
1,852,078 + HP15_1752 0.15 -1.3
1,852,078 + HP15_1752 0.15 +2.3
1,852,078 + HP15_1752 0.15 +0.6
1,852,103 - HP15_1752 0.23 +1.7
1,852,180 + HP15_1752 0.48 -0.4
1,852,212 + HP15_1752 0.58 -0.4
1,852,504 - HP15_1753 0.28 +1.9
1,852,522 - HP15_1753 0.32 +1.6
1,852,656 - HP15_1753 0.61 +2.4
1,852,693 + HP15_1753 0.68 -0.1
1,852,815 + +0.9
1,852,816 + +0.8
1,852,823 - -0.2
1,852,824 - +0.4
1,852,871 + +2.0
1,852,879 - -0.1
1,852,907 + +0.2
1,852,938 - HP15_1754 0.11 -0.1
1,852,967 - HP15_1754 0.15 -0.3
1,852,993 - HP15_1754 0.18 -0.1
1,853,066 + HP15_1754 0.27 -0.3
1,853,274 + HP15_1754 0.54 -0.8

Or see this region's nucleotide sequence