Strain Fitness in Marinobacter adhaerens HP15 around HP15_tRNA33

Experiment: Urea as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1744 and HP15_tRNA33 are separated by 193 nucleotidesHP15_tRNA33 and HP15_1745 are separated by 75 nucleotidesHP15_1745 and HP15_1746 are separated by 171 nucleotides HP15_1744: HP15_1744 - AAA ATPase central domain protein, at 1,842,168 to 1,843,142 _1744 HP15_tRNA33: HP15_tRNA33 - tRNA-Leu, at 1,843,336 to 1,843,422 _tRNA33 HP15_1745: HP15_1745 - methyltransferase type 11, at 1,843,498 to 1,844,151 _1745 HP15_1746: HP15_1746 - cytochrome d ubiquinol oxidase subunit I, at 1,844,323 to 1,845,765 _1746 Position (kb) 1843 1844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1842.411 kb on + strand, within HP15_1744at 1842.691 kb on + strand, within HP15_1744at 1843.117 kb on + strandat 1843.152 kb on - strandat 1843.311 kb on + strandat 1843.511 kb on - strandat 1843.513 kb on + strandat 1843.523 kb on + strandat 1843.576 kb on - strand, within HP15_1745at 1843.576 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.634 kb on - strand, within HP15_1745at 1843.787 kb on - strand, within HP15_1745at 1843.813 kb on - strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.815 kb on + strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.823 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.835 kb on - strand, within HP15_1745at 1843.919 kb on + strand, within HP15_1745at 1843.921 kb on - strand, within HP15_1745at 1843.941 kb on + strand, within HP15_1745at 1844.123 kb on - strandat 1844.162 kb on + strandat 1844.194 kb on - strandat 1844.317 kb on - strandat 1844.421 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
remove
1,842,411 + HP15_1744 0.25 -1.6
1,842,691 + HP15_1744 0.54 -1.8
1,843,117 + -3.0
1,843,152 - -0.5
1,843,311 + +2.1
1,843,511 - -0.4
1,843,513 + +2.1
1,843,523 + -0.1
1,843,576 - HP15_1745 0.12 -0.6
1,843,576 - HP15_1745 0.12 +0.2
1,843,634 - HP15_1745 0.21 +1.6
1,843,634 - HP15_1745 0.21 -0.6
1,843,787 - HP15_1745 0.44 +0.3
1,843,813 - HP15_1745 0.48 -1.0
1,843,815 + HP15_1745 0.48 +0.3
1,843,815 + HP15_1745 0.48 -0.3
1,843,815 + HP15_1745 0.48 -0.4
1,843,815 + HP15_1745 0.48 +2.4
1,843,815 + HP15_1745 0.48 -0.1
1,843,823 - HP15_1745 0.50 +2.2
1,843,823 - HP15_1745 0.50 -0.4
1,843,823 - HP15_1745 0.50 -0.4
1,843,823 - HP15_1745 0.50 -0.3
1,843,823 - HP15_1745 0.50 -0.6
1,843,835 - HP15_1745 0.52 +1.7
1,843,835 - HP15_1745 0.52 -0.4
1,843,919 + HP15_1745 0.64 +2.5
1,843,921 - HP15_1745 0.65 -1.3
1,843,941 + HP15_1745 0.68 +1.9
1,844,123 - +1.9
1,844,162 + -0.0
1,844,194 - -0.0
1,844,317 - -0.5
1,844,421 - -0.5

Or see this region's nucleotide sequence