Strain Fitness in Marinobacter adhaerens HP15 around HP15_1703

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1702 and HP15_1703 are separated by 26 nucleotidesHP15_1703 and HP15_1704 are separated by 74 nucleotidesHP15_1704 and HP15_1705 are separated by 145 nucleotides HP15_1702: HP15_1702 - protein containing DUF785, at 1,796,452 to 1,797,051 _1702 HP15_1703: HP15_1703 - acyl carrier protein phosphodiesterase, at 1,797,078 to 1,797,602 _1703 HP15_1704: HP15_1704 - conserved hypothetical protein, secreted, at 1,797,677 to 1,798,219 _1704 HP15_1705: HP15_1705 - potassium uptake protein, TrkH family, at 1,798,365 to 1,799,882 _1705 Position (kb) 1797 1798Strain fitness (log2 ratio) -1 0 1 2at 1796.081 kb on + strandat 1796.406 kb on - strandat 1796.972 kb on - strand, within HP15_1702at 1796.972 kb on - strand, within HP15_1702at 1797.216 kb on + strand, within HP15_1703at 1797.261 kb on - strand, within HP15_1703at 1797.465 kb on - strand, within HP15_1703at 1797.614 kb on - strandat 1798.103 kb on + strand, within HP15_1704at 1798.108 kb on + strand, within HP15_1704at 1798.111 kb on - strand, within HP15_1704at 1798.113 kb on + strand, within HP15_1704at 1798.121 kb on - strand, within HP15_1704at 1798.254 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.357 kb on + strandat 1798.365 kb on - strandat 1798.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,796,081 + -0.3
1,796,406 - +0.0
1,796,972 - HP15_1702 0.87 -0.3
1,796,972 - HP15_1702 0.87 -0.8
1,797,216 + HP15_1703 0.26 -0.5
1,797,261 - HP15_1703 0.35 -0.6
1,797,465 - HP15_1703 0.74 -0.5
1,797,614 - -0.8
1,798,103 + HP15_1704 0.78 +2.4
1,798,108 + HP15_1704 0.79 +2.6
1,798,111 - HP15_1704 0.80 -0.9
1,798,113 + HP15_1704 0.80 +0.2
1,798,121 - HP15_1704 0.82 +2.1
1,798,254 + -0.7
1,798,357 + +0.6
1,798,357 + +2.5
1,798,357 + +0.8
1,798,357 + +1.7
1,798,357 + -0.8
1,798,357 + +1.6
1,798,357 + +1.7
1,798,357 + -0.1
1,798,365 - +1.7
1,798,365 - -1.5

Or see this region's nucleotide sequence