Strain Fitness in Marinobacter adhaerens HP15 around HP15_1663

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1661 and HP15_1662 are separated by 58 nucleotidesHP15_1662 and HP15_1663 are separated by 321 nucleotidesHP15_1663 and HP15_1664 are separated by 117 nucleotidesHP15_1664 and HP15_1665 are separated by 103 nucleotides HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540 _1661 HP15_1662: HP15_1662 - conserved hypothetical protein, secreted, at 1,754,599 to 1,754,850 _1662 HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167 _1663 HP15_1664: HP15_1664 - thioredoxin, at 1,756,285 to 1,756,608 _1664 HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665 _1665 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1 2 3at 1754.289 kb on + strand, within HP15_1661at 1754.412 kb on + strand, within HP15_1661at 1754.417 kb on + strand, within HP15_1661at 1754.465 kb on - strand, within HP15_1661at 1754.465 kb on - strand, within HP15_1661at 1754.548 kb on - strandat 1754.585 kb on - strandat 1754.653 kb on - strand, within HP15_1662at 1754.668 kb on - strand, within HP15_1662at 1754.668 kb on - strand, within HP15_1662at 1754.730 kb on - strand, within HP15_1662at 1754.743 kb on - strand, within HP15_1662at 1754.929 kb on + strandat 1754.929 kb on + strandat 1754.934 kb on + strandat 1755.004 kb on - strandat 1755.249 kb on + strandat 1755.347 kb on - strand, within HP15_1663at 1755.350 kb on + strand, within HP15_1663at 1755.363 kb on - strand, within HP15_1663at 1755.365 kb on + strand, within HP15_1663at 1755.365 kb on + strand, within HP15_1663at 1755.481 kb on + strand, within HP15_1663at 1755.512 kb on + strand, within HP15_1663at 1755.520 kb on - strand, within HP15_1663at 1755.585 kb on - strand, within HP15_1663at 1755.599 kb on + strand, within HP15_1663at 1755.631 kb on + strand, within HP15_1663at 1755.631 kb on + strand, within HP15_1663at 1755.633 kb on - strand, within HP15_1663at 1755.633 kb on - strand, within HP15_1663at 1755.642 kb on + strand, within HP15_1663at 1755.650 kb on + strand, within HP15_1663at 1755.858 kb on + strand, within HP15_1663at 1756.026 kb on + strand, within HP15_1663at 1756.131 kb on + strandat 1756.131 kb on + strandat 1756.139 kb on - strandat 1756.139 kb on - strandat 1756.202 kb on + strandat 1756.282 kb on + strandat 1756.283 kb on - strandat 1756.328 kb on + strand, within HP15_1664at 1756.328 kb on + strand, within HP15_1664at 1756.330 kb on + strand, within HP15_1664at 1756.333 kb on + strand, within HP15_1664at 1756.336 kb on - strand, within HP15_1664at 1756.338 kb on - strand, within HP15_1664at 1756.340 kb on + strand, within HP15_1664at 1756.346 kb on + strand, within HP15_1664at 1756.354 kb on - strand, within HP15_1664at 1756.376 kb on + strand, within HP15_1664at 1756.462 kb on + strand, within HP15_1664at 1756.524 kb on + strand, within HP15_1664at 1756.538 kb on - strand, within HP15_1664at 1756.610 kb on + strandat 1756.727 kb on + strandat 1756.779 kb on + strandat 1756.881 kb on - strand, within HP15_1665at 1756.901 kb on - strand, within HP15_1665at 1756.941 kb on - strand, within HP15_1665at 1756.967 kb on - strand, within HP15_1665at 1757.083 kb on + strand, within HP15_1665at 1757.093 kb on - strand, within HP15_1665at 1757.123 kb on + strand, within HP15_1665at 1757.131 kb on - strand, within HP15_1665at 1757.143 kb on - strand, within HP15_1665

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,754,289 + HP15_1661 0.21 +0.8
1,754,412 + HP15_1661 0.60 +2.1
1,754,417 + HP15_1661 0.61 -0.9
1,754,465 - HP15_1661 0.76 -0.2
1,754,465 - HP15_1661 0.76 -0.0
1,754,548 - +0.2
1,754,585 - +0.1
1,754,653 - HP15_1662 0.21 -0.2
1,754,668 - HP15_1662 0.27 -0.3
1,754,668 - HP15_1662 0.27 -1.2
1,754,730 - HP15_1662 0.52 -0.3
1,754,743 - HP15_1662 0.57 +2.2
1,754,929 + -0.2
1,754,929 + -0.5
1,754,934 + +2.0
1,755,004 - +2.5
1,755,249 + +2.2
1,755,347 - HP15_1663 0.18 +1.6
1,755,350 + HP15_1663 0.18 -0.5
1,755,363 - HP15_1663 0.19 +2.1
1,755,365 + HP15_1663 0.19 +0.7
1,755,365 + HP15_1663 0.19 +2.1
1,755,481 + HP15_1663 0.31 -0.4
1,755,512 + HP15_1663 0.34 -0.8
1,755,520 - HP15_1663 0.35 -0.2
1,755,585 - HP15_1663 0.41 -0.4
1,755,599 + HP15_1663 0.43 +2.4
1,755,631 + HP15_1663 0.46 +0.6
1,755,631 + HP15_1663 0.46 +0.3
1,755,633 - HP15_1663 0.46 -0.3
1,755,633 - HP15_1663 0.46 +0.2
1,755,642 + HP15_1663 0.47 +1.1
1,755,650 + HP15_1663 0.48 -0.4
1,755,858 + HP15_1663 0.69 +2.8
1,756,026 + HP15_1663 0.86 -0.7
1,756,131 + -1.0
1,756,131 + +2.1
1,756,139 - +1.6
1,756,139 - +1.9
1,756,202 + +0.1
1,756,282 + -0.4
1,756,283 - +0.2
1,756,328 + HP15_1664 0.13 +0.7
1,756,328 + HP15_1664 0.13 -0.1
1,756,330 + HP15_1664 0.14 +0.8
1,756,333 + HP15_1664 0.15 -0.6
1,756,336 - HP15_1664 0.16 +0.4
1,756,338 - HP15_1664 0.16 -0.4
1,756,340 + HP15_1664 0.17 -0.4
1,756,346 + HP15_1664 0.19 -0.1
1,756,354 - HP15_1664 0.21 +2.4
1,756,376 + HP15_1664 0.28 -0.3
1,756,462 + HP15_1664 0.55 +0.1
1,756,524 + HP15_1664 0.74 +2.6
1,756,538 - HP15_1664 0.78 -0.3
1,756,610 + -0.3
1,756,727 + +2.1
1,756,779 + +2.3
1,756,881 - HP15_1665 0.18 +2.0
1,756,901 - HP15_1665 0.20 -1.1
1,756,941 - HP15_1665 0.24 -0.7
1,756,967 - HP15_1665 0.27 -0.7
1,757,083 + HP15_1665 0.39 +0.0
1,757,093 - HP15_1665 0.40 +2.3
1,757,123 + HP15_1665 0.43 -0.2
1,757,131 - HP15_1665 0.44 +2.0
1,757,143 - HP15_1665 0.45 +1.5

Or see this region's nucleotide sequence