Strain Fitness in Marinobacter adhaerens HP15 around HP15_1641

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1640 and HP15_1641 are separated by 77 nucleotidesHP15_1641 and HP15_1642 are separated by 68 nucleotides HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839 _1640 HP15_1641: HP15_1641 - secreted protein, at 1,740,917 to 1,741,087 _1641 HP15_1642: HP15_1642 - transcriptional Regulator, AraC family protein, at 1,741,156 to 1,742,025 _1642 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -1 0 1 2 3at 1739.957 kb on - strand, within HP15_1640at 1740.056 kb on - strand, within HP15_1640at 1740.382 kb on + strand, within HP15_1640at 1740.382 kb on + strand, within HP15_1640at 1740.437 kb on - strand, within HP15_1640at 1740.470 kb on - strand, within HP15_1640at 1740.483 kb on + strand, within HP15_1640at 1740.491 kb on - strand, within HP15_1640at 1740.493 kb on + strand, within HP15_1640at 1740.501 kb on - strand, within HP15_1640at 1740.511 kb on + strand, within HP15_1640at 1740.669 kb on + strand, within HP15_1640at 1740.874 kb on - strandat 1741.198 kb on + strandat 1741.304 kb on - strand, within HP15_1642at 1741.304 kb on - strand, within HP15_1642at 1741.363 kb on + strand, within HP15_1642at 1741.371 kb on - strand, within HP15_1642at 1741.429 kb on + strand, within HP15_1642at 1741.487 kb on - strand, within HP15_1642at 1741.495 kb on + strand, within HP15_1642at 1741.495 kb on + strand, within HP15_1642at 1741.503 kb on - strand, within HP15_1642at 1741.542 kb on - strand, within HP15_1642at 1741.602 kb on - strand, within HP15_1642at 1741.603 kb on - strand, within HP15_1642at 1741.620 kb on + strand, within HP15_1642at 1741.648 kb on - strand, within HP15_1642at 1741.682 kb on - strand, within HP15_1642at 1741.704 kb on + strandat 1741.722 kb on - strand, within HP15_1642at 1741.726 kb on + strand, within HP15_1642at 1741.731 kb on + strand, within HP15_1642at 1741.749 kb on - strand, within HP15_1642at 1741.807 kb on + strand, within HP15_1642at 1741.807 kb on - strand, within HP15_1642at 1741.888 kb on + strand, within HP15_1642at 1742.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,739,957 - HP15_1640 0.10 -0.5
1,740,056 - HP15_1640 0.20 +2.0
1,740,382 + HP15_1640 0.53 +0.1
1,740,382 + HP15_1640 0.53 +1.9
1,740,437 - HP15_1640 0.59 +0.0
1,740,470 - HP15_1640 0.62 -0.2
1,740,483 + HP15_1640 0.64 -0.5
1,740,491 - HP15_1640 0.64 +1.8
1,740,493 + HP15_1640 0.65 +3.1
1,740,501 - HP15_1640 0.65 +0.3
1,740,511 + HP15_1640 0.66 +2.2
1,740,669 + HP15_1640 0.83 +0.0
1,740,874 - -0.8
1,741,198 + -0.3
1,741,304 - HP15_1642 0.17 +2.4
1,741,304 - HP15_1642 0.17 +1.8
1,741,363 + HP15_1642 0.24 -0.5
1,741,371 - HP15_1642 0.25 +2.1
1,741,429 + HP15_1642 0.31 +0.2
1,741,487 - HP15_1642 0.38 +1.6
1,741,495 + HP15_1642 0.39 -0.8
1,741,495 + HP15_1642 0.39 -0.9
1,741,503 - HP15_1642 0.40 +2.4
1,741,542 - HP15_1642 0.44 -0.2
1,741,602 - HP15_1642 0.51 +0.6
1,741,603 - HP15_1642 0.51 +2.0
1,741,620 + HP15_1642 0.53 -1.6
1,741,648 - HP15_1642 0.57 +1.4
1,741,682 - HP15_1642 0.60 -0.2
1,741,704 + -0.2
1,741,722 - HP15_1642 0.65 +0.1
1,741,726 + HP15_1642 0.66 -0.3
1,741,731 + HP15_1642 0.66 -1.1
1,741,749 - HP15_1642 0.68 +1.4
1,741,807 + HP15_1642 0.75 +0.3
1,741,807 - HP15_1642 0.75 +0.4
1,741,888 + HP15_1642 0.84 -0.6
1,742,087 + -0.4

Or see this region's nucleotide sequence