Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1466 and HP15_1467 are separated by 217 nucleotides HP15_1467 and HP15_1468 are separated by 34 nucleotides HP15_1468 and HP15_1469 are separated by 18 nucleotides HP15_1469 and HP15_1470 are separated by 27 nucleotides
HP15_1466: HP15_1466 - nitroreductase family protein, at 1,541,800 to 1,542,351
_1466
HP15_1467: HP15_1467 - fFlagellar basal-body rod protein FlgB, at 1,542,569 to 1,542,988
_1467
HP15_1468: HP15_1468 - flagellar basal-body rod protein FlgC-like protein, at 1,543,023 to 1,543,472
_1468
HP15_1469: HP15_1469 - flagellar hook capping protein, at 1,543,491 to 1,544,168
_1469
HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094
_1470
Position (kb)
1543
1544 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1542.066 kb on - strand, within HP15_1466 at 1542.092 kb on - strand, within HP15_1466 at 1542.094 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.240 kb on - strand, within HP15_1466 at 1542.317 kb on - strand at 1542.403 kb on + strand at 1542.413 kb on + strand at 1542.519 kb on + strand at 1542.546 kb on + strand at 1542.574 kb on - strand at 1542.635 kb on + strand, within HP15_1467 at 1542.892 kb on + strand, within HP15_1467 at 1542.905 kb on - strand, within HP15_1467 at 1542.971 kb on + strand at 1542.995 kb on + strand at 1543.085 kb on + strand, within HP15_1468 at 1543.142 kb on + strand, within HP15_1468 at 1543.269 kb on - strand, within HP15_1468 at 1543.284 kb on + strand, within HP15_1468 at 1543.304 kb on + strand, within HP15_1468 at 1543.433 kb on + strand at 1543.464 kb on - strand at 1543.578 kb on - strand, within HP15_1469 at 1543.679 kb on + strand, within HP15_1469 at 1543.687 kb on + strand, within HP15_1469 at 1543.687 kb on - strand, within HP15_1469 at 1543.687 kb on - strand, within HP15_1469 at 1543.737 kb on - strand, within HP15_1469 at 1543.739 kb on + strand, within HP15_1469 at 1543.885 kb on - strand, within HP15_1469 at 1544.078 kb on - strand, within HP15_1469 at 1544.088 kb on - strand, within HP15_1469 at 1544.194 kb on - strand at 1544.281 kb on - strand at 1544.281 kb on - strand at 1544.360 kb on - strand at 1544.383 kb on + strand at 1544.395 kb on + strand, within HP15_1470 at 1544.395 kb on + strand, within HP15_1470 at 1544.403 kb on - strand, within HP15_1470 at 1544.403 kb on - strand, within HP15_1470 at 1544.430 kb on + strand, within HP15_1470
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 1,542,066 - HP15_1466 0.48 +2.5 1,542,092 - HP15_1466 0.53 -0.2 1,542,094 + HP15_1466 0.53 -0.5 1,542,161 + HP15_1466 0.65 -0.7 1,542,161 + HP15_1466 0.65 -0.1 1,542,208 + HP15_1466 0.74 -0.1 1,542,208 + HP15_1466 0.74 +1.8 1,542,240 - HP15_1466 0.80 -0.4 1,542,317 - +2.0 1,542,403 + -1.0 1,542,413 + -0.4 1,542,519 + -0.1 1,542,546 + +0.8 1,542,574 - +1.1 1,542,635 + HP15_1467 0.16 +1.7 1,542,892 + HP15_1467 0.77 +2.9 1,542,905 - HP15_1467 0.80 +1.5 1,542,971 + +1.6 1,542,995 + +0.3 1,543,085 + HP15_1468 0.14 +1.7 1,543,142 + HP15_1468 0.26 +2.6 1,543,269 - HP15_1468 0.55 +2.2 1,543,284 + HP15_1468 0.58 +1.3 1,543,304 + HP15_1468 0.62 +2.8 1,543,433 + +2.4 1,543,464 - +1.7 1,543,578 - HP15_1469 0.13 +2.9 1,543,679 + HP15_1469 0.28 +2.0 1,543,687 + HP15_1469 0.29 +1.6 1,543,687 - HP15_1469 0.29 +1.8 1,543,687 - HP15_1469 0.29 +2.8 1,543,737 - HP15_1469 0.36 +2.0 1,543,739 + HP15_1469 0.37 +1.8 1,543,885 - HP15_1469 0.58 +1.5 1,544,078 - HP15_1469 0.87 +1.6 1,544,088 - HP15_1469 0.88 +1.5 1,544,194 - +1.7 1,544,281 - +2.7 1,544,281 - +1.9 1,544,360 - +2.1 1,544,383 + +2.2 1,544,395 + HP15_1470 0.10 +2.0 1,544,395 + HP15_1470 0.10 +1.7 1,544,403 - HP15_1470 0.11 +2.0 1,544,403 - HP15_1470 0.11 +2.3 1,544,430 + HP15_1470 0.12 +2.7
Or see this region's nucleotide sequence