Strain Fitness in Marinobacter adhaerens HP15 around HP15_1408

Experiment: Urea as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1406 and HP15_1407 overlap by 4 nucleotidesHP15_1407 and HP15_1408 are separated by 17 nucleotidesHP15_1408 and HP15_1409 are separated by 104 nucleotidesHP15_1409 and HP15_1410 are separated by 51 nucleotides HP15_1406: HP15_1406 - protein containing signal transduction histidine kinase, internal region / ATP-binding region, ATPase-like protein, at 1,486,520 to 1,486,996 _1406 HP15_1407: HP15_1407 - two component transcriptional regulator, LytTR family, at 1,486,993 to 1,487,745 _1407 HP15_1408: HP15_1408 - pirin domain protein, at 1,487,763 to 1,488,674 _1408 HP15_1409: HP15_1409 - protein containing DUF1289, at 1,488,779 to 1,489,024 _1409 HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175 _1410 Position (kb) 1487 1488 1489Strain fitness (log2 ratio) -2 -1 0 1 2at 1486.771 kb on + strand, within HP15_1406at 1486.833 kb on - strand, within HP15_1406at 1486.933 kb on - strand, within HP15_1406at 1486.980 kb on - strandat 1487.028 kb on - strandat 1487.072 kb on - strand, within HP15_1407at 1487.167 kb on + strand, within HP15_1407at 1487.239 kb on + strand, within HP15_1407at 1487.292 kb on + strand, within HP15_1407at 1487.292 kb on + strand, within HP15_1407at 1487.300 kb on - strand, within HP15_1407at 1487.309 kb on + strand, within HP15_1407at 1487.370 kb on - strand, within HP15_1407at 1487.374 kb on - strand, within HP15_1407at 1487.457 kb on + strand, within HP15_1407at 1487.746 kb on + strandat 1487.787 kb on + strandat 1487.874 kb on - strand, within HP15_1408at 1487.969 kb on + strand, within HP15_1408at 1488.179 kb on - strand, within HP15_1408at 1488.310 kb on + strand, within HP15_1408at 1488.310 kb on + strand, within HP15_1408at 1488.421 kb on - strand, within HP15_1408at 1488.527 kb on + strand, within HP15_1408at 1488.535 kb on - strand, within HP15_1408at 1488.602 kb on + strandat 1488.612 kb on + strandat 1488.619 kb on - strandat 1488.725 kb on + strandat 1488.733 kb on + strandat 1488.733 kb on + strandat 1488.741 kb on - strandat 1488.746 kb on - strandat 1488.792 kb on - strandat 1488.946 kb on - strand, within HP15_1409at 1489.137 kb on + strandat 1489.138 kb on - strandat 1489.207 kb on - strandat 1489.240 kb on + strandat 1489.313 kb on + strand, within HP15_1410at 1489.465 kb on + strand, within HP15_1410at 1489.495 kb on + strand, within HP15_1410at 1489.574 kb on + strand, within HP15_1410at 1489.637 kb on + strand, within HP15_1410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
remove
1,486,771 + HP15_1406 0.53 +2.2
1,486,833 - HP15_1406 0.66 +1.9
1,486,933 - HP15_1406 0.87 -0.6
1,486,980 - -0.6
1,487,028 - -0.4
1,487,072 - HP15_1407 0.10 -0.3
1,487,167 + HP15_1407 0.23 +0.7
1,487,239 + HP15_1407 0.33 -0.1
1,487,292 + HP15_1407 0.40 -0.5
1,487,292 + HP15_1407 0.40 -0.3
1,487,300 - HP15_1407 0.41 -0.5
1,487,309 + HP15_1407 0.42 +1.8
1,487,370 - HP15_1407 0.50 +1.3
1,487,374 - HP15_1407 0.51 +0.5
1,487,457 + HP15_1407 0.62 -1.2
1,487,746 + +2.2
1,487,787 + -0.3
1,487,874 - HP15_1408 0.12 +0.1
1,487,969 + HP15_1408 0.23 -0.3
1,488,179 - HP15_1408 0.46 +0.4
1,488,310 + HP15_1408 0.60 -0.7
1,488,310 + HP15_1408 0.60 -0.8
1,488,421 - HP15_1408 0.72 -0.2
1,488,527 + HP15_1408 0.84 -0.9
1,488,535 - HP15_1408 0.85 +0.1
1,488,602 + -2.3
1,488,612 + +2.0
1,488,619 - +2.6
1,488,725 + +0.6
1,488,733 + -0.5
1,488,733 + -1.2
1,488,741 - -0.4
1,488,746 - +0.4
1,488,792 - -0.2
1,488,946 - HP15_1409 0.68 -0.7
1,489,137 + +1.7
1,489,138 - -0.5
1,489,207 - -0.7
1,489,240 + +2.0
1,489,313 + HP15_1410 0.11 +0.1
1,489,465 + HP15_1410 0.19 -0.1
1,489,495 + HP15_1410 0.20 -0.1
1,489,574 + HP15_1410 0.24 +2.1
1,489,637 + HP15_1410 0.27 -0.0

Or see this region's nucleotide sequence