Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1306 and HP15_1307 are separated by 69 nucleotides HP15_1307 and HP15_1308 are separated by 0 nucleotides HP15_1308 and HP15_1309 are separated by 50 nucleotides
HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689
_1306
HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385
_1307
HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901
_1308
HP15_1309: HP15_1309 - signaling modulator of AmpD, AmpE, at 1,368,952 to 1,369,272
_1309
Position (kb)
1367
1368
1369 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1366.958 kb on - strand, within HP15_1306 at 1367.003 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.025 kb on - strand, within HP15_1306 at 1367.063 kb on + strand, within HP15_1306 at 1367.073 kb on + strand, within HP15_1306 at 1367.078 kb on + strand, within HP15_1306 at 1367.212 kb on - strand, within HP15_1306 at 1367.233 kb on - strand, within HP15_1306 at 1367.291 kb on - strand, within HP15_1306 at 1367.334 kb on + strand, within HP15_1306 at 1367.436 kb on + strand, within HP15_1306 at 1367.632 kb on - strand at 1367.702 kb on - strand at 1368.347 kb on + strand at 1368.438 kb on + strand, within HP15_1308 at 1368.463 kb on + strand, within HP15_1308 at 1368.471 kb on - strand, within HP15_1308 at 1368.504 kb on - strand, within HP15_1308 at 1368.692 kb on - strand, within HP15_1308 at 1368.719 kb on + strand, within HP15_1308 at 1368.719 kb on + strand, within HP15_1308 at 1368.750 kb on - strand, within HP15_1308 at 1368.793 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.799 kb on + strand, within HP15_1308 at 1368.807 kb on - strand, within HP15_1308 at 1368.851 kb on + strand at 1368.888 kb on - strand at 1369.156 kb on + strand, within HP15_1309
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 1,366,958 - HP15_1306 0.68 -0.2 1,367,003 - HP15_1306 0.70 +0.1 1,367,025 - HP15_1306 0.71 -1.0 1,367,025 - HP15_1306 0.71 +1.9 1,367,063 + HP15_1306 0.73 +2.2 1,367,073 + HP15_1306 0.73 +2.0 1,367,078 + HP15_1306 0.73 +0.1 1,367,212 - HP15_1306 0.79 +2.3 1,367,233 - HP15_1306 0.80 -0.1 1,367,291 - HP15_1306 0.83 -0.3 1,367,334 + HP15_1306 0.85 -0.5 1,367,436 + HP15_1306 0.89 +3.3 1,367,632 - -0.0 1,367,702 - -1.8 1,368,347 + +3.0 1,368,438 + HP15_1308 0.10 +1.9 1,368,463 + HP15_1308 0.15 +0.2 1,368,471 - HP15_1308 0.16 -0.7 1,368,504 - HP15_1308 0.23 -1.3 1,368,692 - HP15_1308 0.59 -0.5 1,368,719 + HP15_1308 0.65 +1.6 1,368,719 + HP15_1308 0.65 +0.5 1,368,750 - HP15_1308 0.71 -2.0 1,368,793 + HP15_1308 0.79 -0.7 1,368,799 + HP15_1308 0.80 +0.3 1,368,799 + HP15_1308 0.80 -0.8 1,368,799 + HP15_1308 0.80 -0.7 1,368,807 - HP15_1308 0.82 -0.1 1,368,851 + -0.6 1,368,888 - +0.8 1,369,156 + HP15_1309 0.64 -0.1
Or see this region's nucleotide sequence