Strain Fitness in Marinobacter adhaerens HP15 around HP15_1306

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1305 and HP15_1306 are separated by 223 nucleotidesHP15_1306 and HP15_1307 are separated by 69 nucleotidesHP15_1307 and HP15_1308 are separated by 0 nucleotides HP15_1305: HP15_1305 - nicotinate-nucleotide pyrophosphorylase, at 1,364,329 to 1,365,168 _1305 HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689 _1306 HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385 _1307 HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901 _1308 Position (kb) 1365 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1365.194 kb on - strandat 1365.246 kb on + strandat 1365.248 kb on - strandat 1365.278 kb on + strandat 1365.375 kb on - strandat 1365.395 kb on - strandat 1365.483 kb on + strandat 1365.488 kb on + strandat 1365.534 kb on + strandat 1365.552 kb on - strandat 1365.652 kb on - strand, within HP15_1306at 1365.710 kb on - strand, within HP15_1306at 1365.864 kb on + strand, within HP15_1306at 1365.923 kb on + strand, within HP15_1306at 1365.923 kb on + strand, within HP15_1306at 1365.928 kb on + strand, within HP15_1306at 1365.933 kb on + strand, within HP15_1306at 1366.083 kb on + strand, within HP15_1306at 1366.136 kb on - strand, within HP15_1306at 1366.248 kb on - strand, within HP15_1306at 1366.353 kb on + strand, within HP15_1306at 1366.418 kb on - strand, within HP15_1306at 1366.424 kb on - strand, within HP15_1306at 1366.958 kb on - strand, within HP15_1306at 1367.003 kb on - strand, within HP15_1306at 1367.025 kb on - strand, within HP15_1306at 1367.025 kb on - strand, within HP15_1306at 1367.063 kb on + strand, within HP15_1306at 1367.073 kb on + strand, within HP15_1306at 1367.078 kb on + strand, within HP15_1306at 1367.212 kb on - strand, within HP15_1306at 1367.233 kb on - strand, within HP15_1306at 1367.291 kb on - strand, within HP15_1306at 1367.334 kb on + strand, within HP15_1306at 1367.436 kb on + strand, within HP15_1306at 1367.632 kb on - strandat 1367.702 kb on - strandat 1368.347 kb on + strandat 1368.438 kb on + strand, within HP15_1308at 1368.463 kb on + strand, within HP15_1308at 1368.471 kb on - strand, within HP15_1308at 1368.504 kb on - strand, within HP15_1308

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,365,194 - +1.9
1,365,246 + -0.3
1,365,248 - -1.0
1,365,278 + +1.8
1,365,375 - +0.2
1,365,395 - -0.2
1,365,483 + -0.2
1,365,488 + -0.0
1,365,534 + +2.4
1,365,552 - -1.2
1,365,652 - HP15_1306 0.11 -0.8
1,365,710 - HP15_1306 0.14 +2.6
1,365,864 + HP15_1306 0.21 +1.4
1,365,923 + HP15_1306 0.23 -0.6
1,365,923 + HP15_1306 0.23 +1.3
1,365,928 + HP15_1306 0.23 -0.2
1,365,933 + HP15_1306 0.24 -0.5
1,366,083 + HP15_1306 0.30 -0.3
1,366,136 - HP15_1306 0.32 -0.2
1,366,248 - HP15_1306 0.37 +2.1
1,366,353 + HP15_1306 0.42 -0.2
1,366,418 - HP15_1306 0.45 +2.3
1,366,424 - HP15_1306 0.45 -0.5
1,366,958 - HP15_1306 0.68 -0.2
1,367,003 - HP15_1306 0.70 +0.1
1,367,025 - HP15_1306 0.71 -1.0
1,367,025 - HP15_1306 0.71 +1.9
1,367,063 + HP15_1306 0.73 +2.2
1,367,073 + HP15_1306 0.73 +2.0
1,367,078 + HP15_1306 0.73 +0.1
1,367,212 - HP15_1306 0.79 +2.3
1,367,233 - HP15_1306 0.80 -0.1
1,367,291 - HP15_1306 0.83 -0.3
1,367,334 + HP15_1306 0.85 -0.5
1,367,436 + HP15_1306 0.89 +3.3
1,367,632 - -0.0
1,367,702 - -1.8
1,368,347 + +3.0
1,368,438 + HP15_1308 0.10 +1.9
1,368,463 + HP15_1308 0.15 +0.2
1,368,471 - HP15_1308 0.16 -0.7
1,368,504 - HP15_1308 0.23 -1.3

Or see this region's nucleotide sequence