Strain Fitness in Marinobacter adhaerens HP15 around HP15_1099

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1097 and HP15_1098 are separated by 2 nucleotidesHP15_1098 and HP15_1099 are separated by 12 nucleotidesHP15_1099 and HP15_1100 are separated by 106 nucleotides HP15_1097: HP15_1097 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,123,620 to 1,124,387 _1097 HP15_1098: HP15_1098 - inner-membrane translocator, at 1,124,390 to 1,125,346 _1098 HP15_1099: HP15_1099 - inner-membrane translocator, at 1,125,359 to 1,126,222 _1099 HP15_1100: HP15_1100 - ABC-transporter substrate-binding protein, at 1,126,329 to 1,127,231 _1100 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -1 0 1 2 3 4at 1124.420 kb on + strandat 1124.428 kb on - strandat 1124.476 kb on + strandat 1124.590 kb on - strand, within HP15_1098at 1124.609 kb on + strand, within HP15_1098at 1124.920 kb on + strand, within HP15_1098at 1125.052 kb on + strand, within HP15_1098at 1125.060 kb on - strand, within HP15_1098at 1125.078 kb on + strand, within HP15_1098at 1125.111 kb on + strand, within HP15_1098at 1125.111 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.144 kb on + strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.152 kb on - strand, within HP15_1098at 1125.160 kb on + strand, within HP15_1098at 1125.224 kb on + strand, within HP15_1098at 1125.229 kb on - strand, within HP15_1098at 1125.267 kb on + strandat 1125.375 kb on + strandat 1125.473 kb on + strand, within HP15_1099at 1125.625 kb on + strand, within HP15_1099at 1125.627 kb on - strand, within HP15_1099at 1125.645 kb on + strand, within HP15_1099at 1125.700 kb on + strand, within HP15_1099at 1125.713 kb on - strand, within HP15_1099at 1125.728 kb on + strand, within HP15_1099at 1125.732 kb on - strand, within HP15_1099at 1125.746 kb on + strand, within HP15_1099at 1125.759 kb on - strand, within HP15_1099at 1125.834 kb on - strand, within HP15_1099at 1125.869 kb on - strand, within HP15_1099at 1125.892 kb on + strand, within HP15_1099at 1125.892 kb on + strand, within HP15_1099at 1126.005 kb on - strand, within HP15_1099at 1126.005 kb on - strand, within HP15_1099at 1126.005 kb on - strand, within HP15_1099at 1126.005 kb on - strand, within HP15_1099at 1126.140 kb on - strandat 1126.193 kb on - strandat 1126.224 kb on + strandat 1126.239 kb on + strandat 1126.254 kb on + strandat 1126.262 kb on - strandat 1126.271 kb on + strandat 1126.323 kb on - strandat 1126.364 kb on - strandat 1126.372 kb on + strandat 1126.372 kb on + strandat 1126.377 kb on + strandat 1126.377 kb on + strandat 1126.396 kb on - strandat 1126.481 kb on - strand, within HP15_1100at 1126.492 kb on - strand, within HP15_1100at 1126.497 kb on + strand, within HP15_1100at 1126.525 kb on + strand, within HP15_1100at 1126.565 kb on - strand, within HP15_1100at 1126.575 kb on + strand, within HP15_1100at 1126.575 kb on + strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.583 kb on - strand, within HP15_1100at 1126.671 kb on + strand, within HP15_1100at 1126.671 kb on + strand, within HP15_1100at 1126.678 kb on - strand, within HP15_1100at 1126.679 kb on - strand, within HP15_1100at 1126.777 kb on - strand, within HP15_1100at 1126.777 kb on - strand, within HP15_1100at 1126.777 kb on - strand, within HP15_1100at 1126.893 kb on + strand, within HP15_1100at 1126.901 kb on - strand, within HP15_1100at 1126.901 kb on - strand, within HP15_1100at 1126.901 kb on - strand, within HP15_1100at 1126.952 kb on + strand, within HP15_1100at 1126.988 kb on - strand, within HP15_1100at 1127.031 kb on + strand, within HP15_1100at 1127.046 kb on - strand, within HP15_1100at 1127.046 kb on - strand, within HP15_1100at 1127.056 kb on + strand, within HP15_1100at 1127.056 kb on + strand, within HP15_1100at 1127.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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1,124,420 + +2.0
1,124,428 - -0.6
1,124,476 + -0.3
1,124,590 - HP15_1098 0.21 +1.0
1,124,609 + HP15_1098 0.23 -0.1
1,124,920 + HP15_1098 0.55 +0.3
1,125,052 + HP15_1098 0.69 -0.1
1,125,060 - HP15_1098 0.70 +1.9
1,125,078 + HP15_1098 0.72 +0.1
1,125,111 + HP15_1098 0.75 -0.2
1,125,111 + HP15_1098 0.75 -1.0
1,125,144 + HP15_1098 0.79 +2.6
1,125,144 + HP15_1098 0.79 -0.5
1,125,144 + HP15_1098 0.79 -0.2
1,125,152 - HP15_1098 0.80 -0.5
1,125,152 - HP15_1098 0.80 -0.4
1,125,152 - HP15_1098 0.80 +0.4
1,125,152 - HP15_1098 0.80 -0.5
1,125,152 - HP15_1098 0.80 +0.1
1,125,160 + HP15_1098 0.80 +0.9
1,125,224 + HP15_1098 0.87 +1.6
1,125,229 - HP15_1098 0.88 +1.9
1,125,267 + +0.1
1,125,375 + -0.8
1,125,473 + HP15_1099 0.13 +0.9
1,125,625 + HP15_1099 0.31 -0.4
1,125,627 - HP15_1099 0.31 +0.2
1,125,645 + HP15_1099 0.33 +0.7
1,125,700 + HP15_1099 0.39 -0.9
1,125,713 - HP15_1099 0.41 -0.3
1,125,728 + HP15_1099 0.43 +1.8
1,125,732 - HP15_1099 0.43 +0.4
1,125,746 + HP15_1099 0.45 +3.0
1,125,759 - HP15_1099 0.46 -0.3
1,125,834 - HP15_1099 0.55 -0.4
1,125,869 - HP15_1099 0.59 -0.2
1,125,892 + HP15_1099 0.62 +2.2
1,125,892 + HP15_1099 0.62 +2.0
1,126,005 - HP15_1099 0.75 +2.4
1,126,005 - HP15_1099 0.75 +1.3
1,126,005 - HP15_1099 0.75 -0.7
1,126,005 - HP15_1099 0.75 -0.6
1,126,140 - -0.5
1,126,193 - +0.0
1,126,224 + +1.9
1,126,239 + -1.6
1,126,254 + -0.1
1,126,262 - +2.3
1,126,271 + -0.0
1,126,323 - +0.6
1,126,364 - +2.1
1,126,372 + -0.3
1,126,372 + -0.6
1,126,377 + -0.0
1,126,377 + +2.1
1,126,396 - +2.3
1,126,481 - HP15_1100 0.17 -1.0
1,126,492 - HP15_1100 0.18 +0.2
1,126,497 + HP15_1100 0.19 -1.0
1,126,525 + HP15_1100 0.22 +1.0
1,126,565 - HP15_1100 0.26 +0.8
1,126,575 + HP15_1100 0.27 +0.4
1,126,575 + HP15_1100 0.27 -0.1
1,126,583 - HP15_1100 0.28 -0.1
1,126,583 - HP15_1100 0.28 -0.5
1,126,583 - HP15_1100 0.28 +1.7
1,126,583 - HP15_1100 0.28 -0.7
1,126,583 - HP15_1100 0.28 +0.2
1,126,583 - HP15_1100 0.28 -0.9
1,126,671 + HP15_1100 0.38 -1.6
1,126,671 + HP15_1100 0.38 +0.8
1,126,678 - HP15_1100 0.39 -0.4
1,126,679 - HP15_1100 0.39 +0.1
1,126,777 - HP15_1100 0.50 +1.6
1,126,777 - HP15_1100 0.50 -0.3
1,126,777 - HP15_1100 0.50 -1.5
1,126,893 + HP15_1100 0.62 -1.5
1,126,901 - HP15_1100 0.63 -0.2
1,126,901 - HP15_1100 0.63 -0.5
1,126,901 - HP15_1100 0.63 +4.5
1,126,952 + HP15_1100 0.69 -0.4
1,126,988 - HP15_1100 0.73 -0.1
1,127,031 + HP15_1100 0.78 +2.3
1,127,046 - HP15_1100 0.79 -0.2
1,127,046 - HP15_1100 0.79 +0.3
1,127,056 + HP15_1100 0.81 -0.6
1,127,056 + HP15_1100 0.81 -1.1
1,127,185 + -0.3

Or see this region's nucleotide sequence