Strain Fitness in Marinobacter adhaerens HP15 around HP15_110

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_109 and HP15_110 are separated by 14 nucleotidesHP15_110 and HP15_111 are separated by 17 nucleotidesHP15_111 and HP15_112 are separated by 424 nucleotides HP15_109: HP15_109 - cation efflux family protein, at 112,669 to 113,853 _109 HP15_110: HP15_110 - heavy metal efflux pump, CzcA family, at 113,868 to 116,975 _110 HP15_111: HP15_111 - nitrogen regulatory protein PII-like protein, at 116,993 to 117,337 _111 HP15_112: HP15_112 - TonB-dependent receptor protein, at 117,762 to 119,873 _112 Position (kb) 113 114 115 116 117Strain fitness (log2 ratio) -2 -1 0 1 2 3at 112.964 kb on - strand, within HP15_109at 113.010 kb on + strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.033 kb on - strand, within HP15_109at 113.131 kb on + strand, within HP15_109at 113.255 kb on + strand, within HP15_109at 113.287 kb on - strand, within HP15_109at 113.292 kb on - strand, within HP15_109at 113.297 kb on - strand, within HP15_109at 113.320 kb on + strand, within HP15_109at 113.327 kb on + strand, within HP15_109at 113.334 kb on - strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.349 kb on - strand, within HP15_109at 113.368 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.474 kb on + strand, within HP15_109at 113.492 kb on + strand, within HP15_109at 113.539 kb on + strand, within HP15_109at 113.627 kb on - strand, within HP15_109at 113.636 kb on + strand, within HP15_109at 113.705 kb on - strand, within HP15_109at 113.711 kb on + strand, within HP15_109at 113.749 kb on - strandat 113.782 kb on + strandat 113.803 kb on - strandat 113.805 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.904 kb on + strandat 114.006 kb on + strandat 114.009 kb on - strandat 114.025 kb on + strandat 114.070 kb on + strandat 114.179 kb on - strand, within HP15_110at 114.212 kb on - strand, within HP15_110at 114.248 kb on + strand, within HP15_110at 114.274 kb on + strand, within HP15_110at 114.292 kb on - strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.405 kb on - strand, within HP15_110at 114.421 kb on + strand, within HP15_110at 114.437 kb on + strand, within HP15_110at 114.445 kb on - strand, within HP15_110at 114.478 kb on - strand, within HP15_110at 114.554 kb on + strand, within HP15_110at 114.575 kb on + strand, within HP15_110at 114.591 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.677 kb on + strand, within HP15_110at 114.682 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.711 kb on + strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.716 kb on + strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.805 kb on + strand, within HP15_110at 114.851 kb on + strand, within HP15_110at 114.882 kb on + strand, within HP15_110at 114.882 kb on + strand, within HP15_110at 114.889 kb on + strand, within HP15_110at 114.902 kb on - strand, within HP15_110at 114.908 kb on + strand, within HP15_110at 114.916 kb on - strand, within HP15_110at 115.030 kb on + strand, within HP15_110at 115.038 kb on - strand, within HP15_110at 115.038 kb on - strand, within HP15_110at 115.057 kb on + strand, within HP15_110at 115.064 kb on + strand, within HP15_110at 115.065 kb on - strand, within HP15_110at 115.065 kb on - strand, within HP15_110at 115.107 kb on - strand, within HP15_110at 115.112 kb on - strand, within HP15_110at 115.112 kb on - strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on - strand, within HP15_110at 115.435 kb on + strand, within HP15_110at 115.442 kb on + strand, within HP15_110at 115.470 kb on + strand, within HP15_110at 115.509 kb on + strand, within HP15_110at 115.550 kb on + strand, within HP15_110at 115.716 kb on + strand, within HP15_110at 115.811 kb on + strand, within HP15_110at 115.811 kb on + strand, within HP15_110at 115.938 kb on - strand, within HP15_110at 115.962 kb on + strand, within HP15_110at 116.010 kb on + strand, within HP15_110at 116.012 kb on + strand, within HP15_110at 116.058 kb on - strand, within HP15_110at 116.069 kb on + strand, within HP15_110at 116.096 kb on - strand, within HP15_110at 116.297 kb on - strand, within HP15_110at 116.353 kb on + strand, within HP15_110at 116.368 kb on + strand, within HP15_110at 116.467 kb on - strand, within HP15_110at 116.495 kb on - strand, within HP15_110at 116.556 kb on + strand, within HP15_110at 116.556 kb on + strand, within HP15_110at 116.684 kb on - strandat 116.699 kb on + strandat 116.753 kb on + strandat 116.760 kb on + strandat 116.781 kb on + strandat 116.781 kb on + strandat 116.789 kb on - strandat 116.813 kb on - strandat 116.847 kb on - strandat 116.896 kb on + strandat 116.896 kb on + strandat 116.897 kb on - strandat 116.904 kb on - strandat 116.911 kb on + strandat 116.927 kb on - strandat 116.929 kb on + strandat 116.932 kb on - strandat 116.937 kb on - strandat 116.937 kb on - strandat 116.964 kb on + strandat 117.014 kb on - strandat 117.067 kb on - strand, within HP15_111at 117.161 kb on - strand, within HP15_111at 117.271 kb on + strand, within HP15_111at 117.279 kb on - strand, within HP15_111at 117.317 kb on + strandat 117.317 kb on + strandat 117.325 kb on - strandat 117.327 kb on + strandat 117.436 kb on - strandat 117.530 kb on - strandat 117.541 kb on - strandat 117.577 kb on - strandat 117.642 kb on + strandat 117.702 kb on + strandat 117.744 kb on - strandat 117.747 kb on + strandat 117.963 kb on + strandat 117.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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112,964 - HP15_109 0.25 +0.1
113,010 + HP15_109 0.29 -0.4
113,028 - HP15_109 0.30 -1.5
113,028 - HP15_109 0.30 -0.7
113,028 - HP15_109 0.30 -0.6
113,033 - HP15_109 0.31 -0.6
113,131 + HP15_109 0.39 -0.9
113,255 + HP15_109 0.49 -1.3
113,287 - HP15_109 0.52 +1.4
113,292 - HP15_109 0.53 -0.4
113,297 - HP15_109 0.53 +1.6
113,320 + HP15_109 0.55 -1.0
113,327 + HP15_109 0.56 +2.1
113,334 - HP15_109 0.56 +2.2
113,336 + HP15_109 0.56 -0.3
113,336 + HP15_109 0.56 -0.4
113,349 - HP15_109 0.57 -0.6
113,368 + HP15_109 0.59 -0.2
113,434 + HP15_109 0.65 +2.0
113,434 + HP15_109 0.65 +1.4
113,434 + HP15_109 0.65 +2.1
113,474 + HP15_109 0.68 -0.6
113,492 + HP15_109 0.69 +0.9
113,539 + HP15_109 0.73 +0.3
113,627 - HP15_109 0.81 +0.3
113,636 + HP15_109 0.82 +1.9
113,705 - HP15_109 0.87 +2.2
113,711 + HP15_109 0.88 -0.7
113,749 - -0.7
113,782 + -0.9
113,803 - +2.3
113,805 + +1.3
113,848 + -0.2
113,848 + +0.1
113,848 + -0.1
113,848 + -1.3
113,856 - -0.2
113,856 - -0.2
113,856 - -0.6
113,856 - -0.5
113,904 + -0.9
114,006 + +1.6
114,009 - +0.6
114,025 + +2.5
114,070 + -0.3
114,179 - HP15_110 0.10 +0.3
114,212 - HP15_110 0.11 -0.5
114,248 + HP15_110 0.12 -0.5
114,274 + HP15_110 0.13 +2.1
114,292 - HP15_110 0.14 +2.3
114,348 + HP15_110 0.15 +2.2
114,348 + HP15_110 0.15 +2.8
114,348 + HP15_110 0.15 -1.4
114,374 + HP15_110 0.16 -0.1
114,374 + HP15_110 0.16 -0.5
114,374 + HP15_110 0.16 -0.9
114,374 + HP15_110 0.16 +0.2
114,374 + HP15_110 0.16 +2.1
114,374 + HP15_110 0.16 +0.9
114,374 + HP15_110 0.16 +0.1
114,374 + HP15_110 0.16 -0.4
114,374 + HP15_110 0.16 +1.9
114,382 - HP15_110 0.17 -1.4
114,382 - HP15_110 0.17 -0.8
114,382 - HP15_110 0.17 +2.3
114,382 - HP15_110 0.17 +2.2
114,382 - HP15_110 0.17 -0.1
114,405 - HP15_110 0.17 -1.8
114,421 + HP15_110 0.18 +0.9
114,437 + HP15_110 0.18 -0.4
114,445 - HP15_110 0.19 +2.0
114,478 - HP15_110 0.20 +2.3
114,554 + HP15_110 0.22 -0.3
114,575 + HP15_110 0.23 +1.7
114,591 + HP15_110 0.23 +2.1
114,629 + HP15_110 0.24 +1.1
114,629 + HP15_110 0.24 -0.3
114,629 + HP15_110 0.24 -0.9
114,637 - HP15_110 0.25 -1.0
114,637 - HP15_110 0.25 +2.1
114,637 - HP15_110 0.25 -0.3
114,637 - HP15_110 0.25 +0.8
114,637 - HP15_110 0.25 +0.1
114,677 + HP15_110 0.26 -0.5
114,682 + HP15_110 0.26 -0.6
114,706 + HP15_110 0.27 +1.7
114,706 + HP15_110 0.27 +0.5
114,711 + HP15_110 0.27 -0.5
114,714 - HP15_110 0.27 -0.8
114,714 - HP15_110 0.27 -0.6
114,716 + HP15_110 0.27 -0.5
114,724 - HP15_110 0.28 +0.0
114,724 - HP15_110 0.28 -0.3
114,805 + HP15_110 0.30 +1.9
114,851 + HP15_110 0.32 +2.0
114,882 + HP15_110 0.33 +1.8
114,882 + HP15_110 0.33 -0.6
114,889 + HP15_110 0.33 +0.2
114,902 - HP15_110 0.33 -0.8
114,908 + HP15_110 0.33 +2.2
114,916 - HP15_110 0.34 -0.5
115,030 + HP15_110 0.37 -0.4
115,038 - HP15_110 0.38 -0.0
115,038 - HP15_110 0.38 -0.1
115,057 + HP15_110 0.38 -0.6
115,064 + HP15_110 0.38 +2.3
115,065 - HP15_110 0.39 +2.5
115,065 - HP15_110 0.39 -0.9
115,107 - HP15_110 0.40 +0.1
115,112 - HP15_110 0.40 +0.1
115,112 - HP15_110 0.40 -0.6
115,260 + HP15_110 0.45 +1.3
115,260 + HP15_110 0.45 +0.2
115,260 + HP15_110 0.45 +2.0
115,260 - HP15_110 0.45 +0.0
115,435 + HP15_110 0.50 +0.3
115,442 + HP15_110 0.51 -0.0
115,470 + HP15_110 0.52 +2.2
115,509 + HP15_110 0.53 +1.9
115,550 + HP15_110 0.54 +0.0
115,716 + HP15_110 0.59 -1.3
115,811 + HP15_110 0.63 -0.4
115,811 + HP15_110 0.63 -0.2
115,938 - HP15_110 0.67 +0.1
115,962 + HP15_110 0.67 +0.1
116,010 + HP15_110 0.69 -0.3
116,012 + HP15_110 0.69 +2.2
116,058 - HP15_110 0.70 +0.6
116,069 + HP15_110 0.71 +3.2
116,096 - HP15_110 0.72 -0.6
116,297 - HP15_110 0.78 +2.3
116,353 + HP15_110 0.80 +2.0
116,368 + HP15_110 0.80 -0.0
116,467 - HP15_110 0.84 +0.5
116,495 - HP15_110 0.85 +2.0
116,556 + HP15_110 0.86 +1.8
116,556 + HP15_110 0.86 -0.5
116,684 - -1.0
116,699 + +1.7
116,753 + +2.3
116,760 + +1.4
116,781 + -0.4
116,781 + +1.4
116,789 - +1.9
116,813 - +0.5
116,847 - +2.1
116,896 + +0.9
116,896 + -0.1
116,897 - +1.2
116,904 - +1.1
116,911 + +0.2
116,927 - -0.1
116,929 + -0.4
116,932 - -1.1
116,937 - -0.9
116,937 - -0.1
116,964 + -0.9
117,014 - -0.1
117,067 - HP15_111 0.21 -0.0
117,161 - HP15_111 0.49 +2.4
117,271 + HP15_111 0.81 +0.2
117,279 - HP15_111 0.83 +0.9
117,317 + +2.2
117,317 + -0.7
117,325 - +0.1
117,327 + -0.3
117,436 - +0.0
117,530 - -0.4
117,541 - -0.5
117,577 - -0.2
117,642 + -0.7
117,702 + -0.4
117,744 - +0.9
117,747 + +0.4
117,963 + -0.1
117,971 - -1.0

Or see this region's nucleotide sequence