Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3192

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3190 and DvMF_3191 overlap by 32 nucleotidesDvMF_3191 and DvMF_3192 are separated by 3 nucleotidesDvMF_3192 and DvMF_3193 are separated by 16 nucleotides DvMF_3190: DvMF_3190 - NADH dehydrogenase (ubiquinone) 30 kDa subunit (RefSeq), at 4,020,594 to 4,021,241 _3190 DvMF_3191: DvMF_3191 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 4,021,210 to 4,021,899 _3191 DvMF_3192: DvMF_3192 - NADH ubiquinone oxidoreductase 20 kDa subunit (RefSeq), at 4,021,903 to 4,022,343 _3192 DvMF_3193: DvMF_3193 - respiratory-chain NADH dehydrogenase subunit 1 (RefSeq), at 4,022,360 to 4,023,358 _3193 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -1 0 1 2at 4020.968 kb on + strand, within DvMF_3190at 4020.970 kb on - strand, within DvMF_3190at 4021.207 kb on + strandat 4021.568 kb on - strand, within DvMF_3191at 4022.171 kb on + strand, within DvMF_3192at 4022.587 kb on - strand, within DvMF_3193at 4022.624 kb on + strand, within DvMF_3193at 4023.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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4,020,968 + DvMF_3190 0.58 -1.4
4,020,970 - DvMF_3190 0.58 +0.2
4,021,207 + -1.0
4,021,568 - DvMF_3191 0.52 +2.2
4,022,171 + DvMF_3192 0.61 +1.1
4,022,587 - DvMF_3193 0.23 +0.8
4,022,624 + DvMF_3193 0.26 +1.8
4,023,304 + -0.4

Or see this region's nucleotide sequence