Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3152

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3151 and DvMF_3152 are separated by 177 nucleotidesDvMF_3152 and DvMF_3153 are separated by 67 nucleotidesDvMF_3153 and DvMF_3154 are separated by 116 nucleotides DvMF_3151: DvMF_3151 - ABC transporter related (RefSeq), at 3,976,116 to 3,976,844 _3151 DvMF_3152: DvMF_3152 - extracellular solute-binding protein family 3 (RefSeq), at 3,977,022 to 3,977,837 _3152 DvMF_3153: DvMF_3153 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,977,905 to 3,978,606 _3153 DvMF_3154: DvMF_3154 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,978,723 to 3,979,412 _3154 Position (kb) 3977 3978Strain fitness (log2 ratio) -2 -1 0 1at 3976.193 kb on + strand, within DvMF_3151at 3976.246 kb on + strandat 3976.287 kb on + strand, within DvMF_3151at 3976.733 kb on - strand, within DvMF_3151at 3976.810 kb on + strandat 3976.823 kb on - strandat 3976.900 kb on - strandat 3977.019 kb on + strandat 3977.050 kb on - strandat 3977.110 kb on - strand, within DvMF_3152at 3977.123 kb on + strand, within DvMF_3152at 3977.294 kb on - strand, within DvMF_3152at 3977.380 kb on + strand, within DvMF_3152at 3977.555 kb on + strand, within DvMF_3152at 3977.609 kb on + strand, within DvMF_3152at 3977.842 kb on + strandat 3978.157 kb on + strand, within DvMF_3153at 3978.178 kb on - strand, within DvMF_3153at 3978.232 kb on + strand, within DvMF_3153at 3978.297 kb on + strand, within DvMF_3153at 3978.438 kb on - strand, within DvMF_3153at 3978.490 kb on + strand, within DvMF_3153at 3978.568 kb on - strandat 3978.669 kb on + strandat 3978.821 kb on - strand, within DvMF_3154

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,976,193 + DvMF_3151 0.11 -0.0
3,976,246 + +1.4
3,976,287 + DvMF_3151 0.23 -1.1
3,976,733 - DvMF_3151 0.85 -0.9
3,976,810 + -0.4
3,976,823 - +0.2
3,976,900 - +0.0
3,977,019 + -1.0
3,977,050 - -0.9
3,977,110 - DvMF_3152 0.11 -0.9
3,977,123 + DvMF_3152 0.12 -0.3
3,977,294 - DvMF_3152 0.33 -0.7
3,977,380 + DvMF_3152 0.44 -0.7
3,977,555 + DvMF_3152 0.65 -1.0
3,977,609 + DvMF_3152 0.72 -0.4
3,977,842 + -0.8
3,978,157 + DvMF_3153 0.36 -0.9
3,978,178 - DvMF_3153 0.39 -0.9
3,978,232 + DvMF_3153 0.47 -1.4
3,978,297 + DvMF_3153 0.56 -1.4
3,978,438 - DvMF_3153 0.76 -1.6
3,978,490 + DvMF_3153 0.83 -0.9
3,978,568 - -1.1
3,978,669 + -1.8
3,978,821 - DvMF_3154 0.14 -0.8

Or see this region's nucleotide sequence