Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3136 and DvMF_3137 are separated by 253 nucleotides DvMF_3137 and DvMF_3138 overlap by 4 nucleotides DvMF_3138 and DvMF_3139 are separated by 6 nucleotides
DvMF_3136: DvMF_3136 - lipopolysaccharide heptosyltransferase II (RefSeq), at 3,955,868 to 3,956,902
_3136
DvMF_3137: DvMF_3137 - ABC transporter related (RefSeq), at 3,957,156 to 3,957,989
_3137
DvMF_3138: DvMF_3138 - cobalt ABC transporter, inner membrane subunit CbiQ (RefSeq), at 3,957,986 to 3,958,783
_3138
DvMF_3139: DvMF_3139 - cobalt transport protein CbiM (RefSeq), at 3,958,790 to 3,959,404
_3139
Position (kb)
3957
3958 Strain fitness (log2 ratio)
-1
0
1 at 3957.020 kb on + strand at 3957.039 kb on - strand at 3957.171 kb on - strand at 3957.243 kb on - strand, within DvMF_3137 at 3957.308 kb on + strand, within DvMF_3137 at 3957.384 kb on + strand, within DvMF_3137 at 3957.384 kb on + strand, within DvMF_3137 at 3957.663 kb on + strand, within DvMF_3137 at 3957.837 kb on + strand, within DvMF_3137 at 3958.045 kb on + strand at 3958.045 kb on + strand at 3958.053 kb on - strand at 3958.139 kb on - strand, within DvMF_3138 at 3958.363 kb on - strand, within DvMF_3138 at 3958.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 3,957,020 + -1.0 3,957,039 - -1.3 3,957,171 - -1.3 3,957,243 - DvMF_3137 0.10 -1.0 3,957,308 + DvMF_3137 0.18 -0.5 3,957,384 + DvMF_3137 0.27 -0.5 3,957,384 + DvMF_3137 0.27 -0.6 3,957,663 + DvMF_3137 0.61 -1.2 3,957,837 + DvMF_3137 0.82 +0.2 3,958,045 + -0.8 3,958,045 + +0.4 3,958,053 - -0.2 3,958,139 - DvMF_3138 0.19 -0.3 3,958,363 - DvMF_3138 0.47 -1.7 3,958,832 + -0.4
Or see this region's nucleotide sequence