Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3065

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgroEL and DvMF_3065 are separated by 209 nucleotidesDvMF_3065 and DvMF_3066 are separated by 284 nucleotides DvMF_3064: groEL - chaperonin GroEL (RefSeq), at 3,869,074 to 3,870,720 groEL DvMF_3065: DvMF_3065 - HAD family hydrolase (RefSeq), at 3,870,930 to 3,871,478 _3065 DvMF_3066: DvMF_3066 - hypothetical protein (RefSeq), at 3,871,763 to 3,872,029 _3066 Position (kb) 3870 3871 3872Strain fitness (log2 ratio) -1 0 1at 3870.916 kb on - strandat 3871.018 kb on - strand, within DvMF_3065at 3871.169 kb on - strand, within DvMF_3065at 3871.208 kb on - strand, within DvMF_3065at 3871.227 kb on + strand, within DvMF_3065at 3871.344 kb on + strand, within DvMF_3065at 3871.525 kb on + strandat 3871.747 kb on + strandat 3871.938 kb on - strand, within DvMF_3066at 3872.111 kb on + strandat 3872.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,870,916 - -0.4
3,871,018 - DvMF_3065 0.16 -1.4
3,871,169 - DvMF_3065 0.44 -0.6
3,871,208 - DvMF_3065 0.51 -1.6
3,871,227 + DvMF_3065 0.54 -1.1
3,871,344 + DvMF_3065 0.75 -0.9
3,871,525 + -0.4
3,871,747 + -0.8
3,871,938 - DvMF_3066 0.66 +0.2
3,872,111 + -0.7
3,872,111 + +0.9

Or see this region's nucleotide sequence