Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3063

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3062 and DvMF_3063 are separated by 535 nucleotidesDvMF_3063 and groEL are separated by 43 nucleotides DvMF_3062: DvMF_3062 - Na+/H+ antiporter NhaC (RefSeq), at 3,866,801 to 3,868,207 _3062 DvMF_3063: DvMF_3063 - chaperonin Cpn10 (RefSeq), at 3,868,743 to 3,869,030 _3063 DvMF_3064: groEL - chaperonin GroEL (RefSeq), at 3,869,074 to 3,870,720 groEL Position (kb) 3868 3869 3870Strain fitness (log2 ratio) -1 0 1at 3867.778 kb on + strand, within DvMF_3062at 3867.972 kb on + strand, within DvMF_3062at 3867.972 kb on + strand, within DvMF_3062at 3868.194 kb on - strandat 3868.298 kb on + strandat 3868.298 kb on + strandat 3868.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,867,778 + DvMF_3062 0.69 -0.3
3,867,972 + DvMF_3062 0.83 -1.2
3,867,972 + DvMF_3062 0.83 -0.6
3,868,194 - -0.9
3,868,298 + -0.8
3,868,298 + -1.4
3,868,333 - -0.7

Or see this region's nucleotide sequence