Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2993

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2992 and DvMF_R0077 are separated by 405 nucleotidesDvMF_R0077 and DvMF_2993 are separated by 274 nucleotidesDvMF_2993 and DvMF_2994 are separated by 10 nucleotides DvMF_2992: DvMF_2992 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 3,773,202 to 3,776,096 _2992 DvMF_R0077: DvMF_R0077 - tRNA-Asn (RefSeq), at 3,776,502 to 3,776,577 _R0077 DvMF_2993: DvMF_2993 - lysyl-tRNA synthetase (RefSeq), at 3,776,852 to 3,778,357 _2993 DvMF_2994: DvMF_2994 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 3,778,368 to 3,779,621 _2994 Position (kb) 3776 3777 3778 3779Strain fitness (log2 ratio) -1 0 1at 3775.958 kb on + strandat 3776.121 kb on - strandat 3776.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,775,958 + -0.8
3,776,121 - -1.1
3,776,298 + -1.3

Or see this region's nucleotide sequence