Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2888

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2885 and DvMF_2886 are separated by 196 nucleotidesDvMF_2886 and rpsP are separated by 83 nucleotidesrpsP and DvMF_2888 are separated by 88 nucleotidesDvMF_2888 and DvMF_2889 are separated by 356 nucleotides DvMF_2885: DvMF_2885 - 16S rRNA processing protein RimM (RefSeq), at 3,641,983 to 3,642,615 _2885 DvMF_2886: DvMF_2886 - hypothetical protein (RefSeq), at 3,642,812 to 3,643,045 _2886 DvMF_2887: rpsP - 30S ribosomal protein S16 (RefSeq), at 3,643,129 to 3,643,368 rpsP DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013 _2888 DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554 _2889 Position (kb) 3643 3644 3645 3646Strain fitness (log2 ratio) -1 0 1at 3645.149 kb on + strandat 3645.187 kb on + strandat 3645.195 kb on - strandat 3645.196 kb on - strandat 3645.617 kb on - strand, within DvMF_2889at 3645.779 kb on + strand, within DvMF_2889at 3645.829 kb on + strand, within DvMF_2889

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,645,149 + -0.8
3,645,187 + -0.9
3,645,195 - -0.2
3,645,196 - -1.0
3,645,617 - DvMF_2889 0.21 -0.1
3,645,779 + DvMF_2889 0.35 +0.3
3,645,829 + DvMF_2889 0.39 +0.3

Or see this region's nucleotide sequence