Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2877 and DvMF_2878 are separated by 3 nucleotides DvMF_2878 and DvMF_2879 are separated by 54 nucleotides DvMF_2879 and DvMF_2880 are separated by 97 nucleotides
DvMF_2877: DvMF_2877 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,634,888 to 3,636,663
_2877
DvMF_2878: DvMF_2878 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,636,667 to 3,636,963
_2878
DvMF_2879: DvMF_2879 - PTS system mannose/fructose/sorbose family IID component (RefSeq), at 3,637,018 to 3,637,797
_2879
DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734
_2880
Position (kb)
3636
3637 Strain fitness (log2 ratio)
-2
-1
0
1 at 3635.770 kb on + strand, within DvMF_2877 at 3635.833 kb on - strand, within DvMF_2877 at 3635.968 kb on - strand, within DvMF_2877 at 3636.061 kb on - strand, within DvMF_2877 at 3636.144 kb on + strand, within DvMF_2877 at 3636.152 kb on - strand, within DvMF_2877 at 3636.177 kb on - strand, within DvMF_2877 at 3636.195 kb on + strand, within DvMF_2877 at 3636.203 kb on - strand, within DvMF_2877 at 3636.212 kb on + strand, within DvMF_2877 at 3636.467 kb on - strand, within DvMF_2877 at 3636.527 kb on - strand at 3636.664 kb on + strand at 3636.664 kb on + strand at 3636.918 kb on + strand, within DvMF_2878 at 3636.926 kb on - strand, within DvMF_2878 at 3637.052 kb on + strand at 3637.321 kb on + strand, within DvMF_2879 at 3637.421 kb on + strand, within DvMF_2879 at 3637.444 kb on + strand, within DvMF_2879 at 3637.479 kb on + strand, within DvMF_2879 at 3637.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 3,635,770 + DvMF_2877 0.50 -1.9 3,635,833 - DvMF_2877 0.53 -1.6 3,635,968 - DvMF_2877 0.61 -2.0 3,636,061 - DvMF_2877 0.66 -1.5 3,636,144 + DvMF_2877 0.71 -1.9 3,636,152 - DvMF_2877 0.71 -1.6 3,636,177 - DvMF_2877 0.73 -1.8 3,636,195 + DvMF_2877 0.74 -1.9 3,636,203 - DvMF_2877 0.74 -1.8 3,636,212 + DvMF_2877 0.75 -1.6 3,636,467 - DvMF_2877 0.89 -1.5 3,636,527 - -1.9 3,636,664 + -1.7 3,636,664 + -1.6 3,636,918 + DvMF_2878 0.85 -2.1 3,636,926 - DvMF_2878 0.87 -2.7 3,637,052 + +0.5 3,637,321 + DvMF_2879 0.39 -0.3 3,637,421 + DvMF_2879 0.52 +0.1 3,637,444 + DvMF_2879 0.55 +0.7 3,637,479 + DvMF_2879 0.59 -0.3 3,637,900 - -0.1
Or see this region's nucleotide sequence