Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2835

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2834 and dnaK are separated by 407 nucleotidesdnaK and DvMF_2836 are separated by 41 nucleotides DvMF_2834: DvMF_2834 - hypothetical protein (RefSeq), at 3,579,336 to 3,579,683 _2834 DvMF_2835: dnaK - molecular chaperone DnaK (RefSeq), at 3,580,091 to 3,582,010 dnaK DvMF_2836: DvMF_2836 - hypothetical protein (RefSeq), at 3,582,052 to 3,584,379 _2836 Position (kb) 3580 3581 3582 3583Strain fitness (log2 ratio) -3 -2 -1 0 1at 3579.118 kb on + strandat 3579.151 kb on + strandat 3579.153 kb on + strandat 3579.494 kb on + strand, within DvMF_2834at 3579.496 kb on + strand, within DvMF_2834at 3579.874 kb on + strandat 3582.044 kb on + strandat 3582.062 kb on - strandat 3582.329 kb on - strand, within DvMF_2836at 3582.343 kb on - strand, within DvMF_2836at 3582.388 kb on + strand, within DvMF_2836at 3582.561 kb on + strand, within DvMF_2836at 3582.731 kb on - strand, within DvMF_2836

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,579,118 + -0.8
3,579,151 + -1.1
3,579,153 + -0.9
3,579,494 + DvMF_2834 0.45 -1.1
3,579,496 + DvMF_2834 0.46 -1.2
3,579,874 + -0.9
3,582,044 + -0.6
3,582,062 - -0.5
3,582,329 - DvMF_2836 0.12 -0.9
3,582,343 - DvMF_2836 0.12 -1.9
3,582,388 + DvMF_2836 0.14 -2.0
3,582,561 + DvMF_2836 0.22 -3.4
3,582,731 - DvMF_2836 0.29 -3.5

Or see this region's nucleotide sequence