Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2782

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2780 and DvMF_2781 are separated by 208 nucleotidesDvMF_2781 and DvMF_2782 overlap by 4 nucleotidesDvMF_2782 and DvMF_2783 are separated by 443 nucleotides DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898 _2780 DvMF_2781: DvMF_2781 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,519,107 to 3,519,802 _2781 DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653 _2782 DvMF_2783: DvMF_2783 - acetate/CoA ligase (RefSeq), at 3,521,097 to 3,523,052 _2783 Position (kb) 3519 3520 3521Strain fitness (log2 ratio) -2 -1 0 1at 3519.192 kb on + strand, within DvMF_2781at 3519.219 kb on - strand, within DvMF_2781at 3519.392 kb on - strand, within DvMF_2781at 3519.498 kb on + strand, within DvMF_2781at 3519.710 kb on + strand, within DvMF_2781at 3519.813 kb on + strandat 3519.826 kb on + strandat 3519.959 kb on + strand, within DvMF_2782at 3519.989 kb on - strand, within DvMF_2782at 3520.497 kb on - strand, within DvMF_2782at 3520.595 kb on + strandat 3520.725 kb on - strandat 3520.755 kb on + strandat 3521.097 kb on - strandat 3521.414 kb on - strand, within DvMF_2783at 3521.476 kb on + strand, within DvMF_2783at 3521.530 kb on + strand, within DvMF_2783

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,519,192 + DvMF_2781 0.12 -0.8
3,519,219 - DvMF_2781 0.16 -0.5
3,519,392 - DvMF_2781 0.41 -1.0
3,519,498 + DvMF_2781 0.56 -0.4
3,519,710 + DvMF_2781 0.87 -0.7
3,519,813 + -0.6
3,519,826 + -0.9
3,519,959 + DvMF_2782 0.19 -1.3
3,519,989 - DvMF_2782 0.22 -0.6
3,520,497 - DvMF_2782 0.82 -0.4
3,520,595 + -1.3
3,520,725 - +0.2
3,520,755 + -0.5
3,521,097 - -1.0
3,521,414 - DvMF_2783 0.16 -2.4
3,521,476 + DvMF_2783 0.19 -0.5
3,521,530 + DvMF_2783 0.22 -2.6

Or see this region's nucleotide sequence