Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2778 and DvMF_2779 overlap by 4 nucleotides DvMF_2779 and DvMF_2780 are separated by 504 nucleotides
DvMF_2778: DvMF_2778 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,512,891 to 3,515,362
_2778
DvMF_2779: DvMF_2779 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,515,359 to 3,517,572
_2779
DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898
_2780
Position (kb)
3515
3516
3517
3518 Strain fitness (log2 ratio)
-1
0
1 at 3514.551 kb on + strand, within DvMF_2778 at 3514.668 kb on - strand, within DvMF_2778 at 3514.686 kb on + strand, within DvMF_2778 at 3514.936 kb on - strand, within DvMF_2778 at 3515.004 kb on - strand, within DvMF_2778 at 3515.493 kb on + strand at 3515.646 kb on - strand, within DvMF_2779 at 3515.698 kb on - strand, within DvMF_2779 at 3515.778 kb on + strand, within DvMF_2779 at 3515.778 kb on + strand, within DvMF_2779 at 3515.813 kb on + strand, within DvMF_2779 at 3515.849 kb on + strand, within DvMF_2779 at 3516.187 kb on - strand, within DvMF_2779 at 3516.218 kb on - strand, within DvMF_2779 at 3516.323 kb on - strand, within DvMF_2779 at 3516.418 kb on - strand, within DvMF_2779 at 3516.418 kb on - strand, within DvMF_2779 at 3516.418 kb on - strand, within DvMF_2779 at 3516.731 kb on - strand, within DvMF_2779 at 3516.763 kb on - strand, within DvMF_2779 at 3516.763 kb on - strand, within DvMF_2779 at 3516.974 kb on + strand, within DvMF_2779 at 3516.982 kb on - strand, within DvMF_2779 at 3516.982 kb on - strand, within DvMF_2779 at 3517.008 kb on + strand, within DvMF_2779 at 3517.172 kb on - strand, within DvMF_2779 at 3517.825 kb on + strand at 3517.923 kb on + strand at 3518.130 kb on + strand at 3518.438 kb on - strand, within DvMF_2780 at 3518.559 kb on - strand, within DvMF_2780
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 3,514,551 + DvMF_2778 0.67 -0.6 3,514,668 - DvMF_2778 0.72 -1.0 3,514,686 + DvMF_2778 0.73 -1.3 3,514,936 - DvMF_2778 0.83 -0.7 3,515,004 - DvMF_2778 0.85 -1.2 3,515,493 + -1.0 3,515,646 - DvMF_2779 0.13 -1.0 3,515,698 - DvMF_2779 0.15 -0.7 3,515,778 + DvMF_2779 0.19 -1.0 3,515,778 + DvMF_2779 0.19 -0.7 3,515,813 + DvMF_2779 0.21 -0.6 3,515,849 + DvMF_2779 0.22 -0.6 3,516,187 - DvMF_2779 0.37 -0.4 3,516,218 - DvMF_2779 0.39 -0.3 3,516,323 - DvMF_2779 0.44 -0.4 3,516,418 - DvMF_2779 0.48 +1.1 3,516,418 - DvMF_2779 0.48 -1.1 3,516,418 - DvMF_2779 0.48 -0.8 3,516,731 - DvMF_2779 0.62 -0.4 3,516,763 - DvMF_2779 0.63 -0.8 3,516,763 - DvMF_2779 0.63 +0.5 3,516,974 + DvMF_2779 0.73 -0.9 3,516,982 - DvMF_2779 0.73 -0.7 3,516,982 - DvMF_2779 0.73 -0.5 3,517,008 + DvMF_2779 0.74 -1.1 3,517,172 - DvMF_2779 0.82 -0.8 3,517,825 + -1.1 3,517,923 + -1.1 3,518,130 + -0.7 3,518,438 - DvMF_2780 0.44 -0.6 3,518,559 - DvMF_2780 0.59 +0.4
Or see this region's nucleotide sequence