Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2619

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2618 and DvMF_2619 are separated by 24 nucleotidesDvMF_2619 and DvMF_2620 are separated by 158 nucleotides DvMF_2618: DvMF_2618 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 3,307,621 to 3,308,880 _2618 DvMF_2619: DvMF_2619 - ferredoxin, 2Fe-2S (RefSeq), at 3,308,905 to 3,309,207 _2619 DvMF_2620: DvMF_2620 - nitrogenase MoFe cofactor biosynthesis protein NifE (RefSeq), at 3,309,366 to 3,310,790 _2620 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -1 0 1at 3308.016 kb on + strand, within DvMF_2618at 3308.031 kb on + strand, within DvMF_2618at 3308.153 kb on - strand, within DvMF_2618at 3308.717 kb on - strand, within DvMF_2618at 3308.848 kb on + strandat 3308.964 kb on - strand, within DvMF_2619at 3309.124 kb on + strand, within DvMF_2619at 3309.302 kb on - strandat 3309.504 kb on - strandat 3309.549 kb on + strand, within DvMF_2620at 3309.551 kb on + strand, within DvMF_2620at 3309.571 kb on - strand, within DvMF_2620at 3309.585 kb on - strand, within DvMF_2620at 3309.606 kb on + strand, within DvMF_2620at 3309.999 kb on - strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.113 kb on + strand, within DvMF_2620at 3310.121 kb on - strand, within DvMF_2620at 3310.121 kb on - strand, within DvMF_2620

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,308,016 + DvMF_2618 0.31 -1.3
3,308,031 + DvMF_2618 0.33 -0.6
3,308,153 - DvMF_2618 0.42 -0.7
3,308,717 - DvMF_2618 0.87 +0.5
3,308,848 + -0.8
3,308,964 - DvMF_2619 0.19 -1.4
3,309,124 + DvMF_2619 0.72 -1.7
3,309,302 - -0.7
3,309,504 - -0.8
3,309,549 + DvMF_2620 0.13 -0.2
3,309,551 + DvMF_2620 0.13 -0.6
3,309,571 - DvMF_2620 0.14 -0.8
3,309,585 - DvMF_2620 0.15 -0.5
3,309,606 + DvMF_2620 0.17 -0.5
3,309,999 - DvMF_2620 0.44 -1.1
3,310,113 + DvMF_2620 0.52 -1.5
3,310,113 + DvMF_2620 0.52 -0.7
3,310,113 + DvMF_2620 0.52 -1.1
3,310,121 - DvMF_2620 0.53 -0.6
3,310,121 - DvMF_2620 0.53 -0.8

Or see this region's nucleotide sequence