Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2258

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2257 and DvMF_2258 are separated by 205 nucleotidesDvMF_2258 and DvMF_2259 are separated by 137 nucleotidesDvMF_2259 and DvMF_2260 overlap by 4 nucleotides DvMF_2257: DvMF_2257 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,835,882 to 2,837,693 _2257 DvMF_2258: DvMF_2258 - hypothetical protein (RefSeq), at 2,837,899 to 2,838,387 _2258 DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349 _2259 DvMF_2260: DvMF_2260 - cobalamin synthesis protein P47K (RefSeq), at 2,839,346 to 2,840,125 _2260 Position (kb) 2837 2838 2839Strain fitness (log2 ratio) -2 -1 0 1at 2836.999 kb on - strand, within DvMF_2257at 2837.442 kb on + strand, within DvMF_2257at 2837.492 kb on + strand, within DvMF_2257at 2837.639 kb on + strandat 2837.647 kb on - strandat 2837.952 kb on + strand, within DvMF_2258at 2838.549 kb on - strandat 2838.666 kb on - strand, within DvMF_2259at 2838.740 kb on + strand, within DvMF_2259at 2838.810 kb on + strand, within DvMF_2259at 2838.994 kb on + strand, within DvMF_2259at 2839.052 kb on + strand, within DvMF_2259at 2839.052 kb on - strand, within DvMF_2259at 2839.179 kb on + strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.187 kb on - strand, within DvMF_2259at 2839.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,836,999 - DvMF_2257 0.62 -0.3
2,837,442 + DvMF_2257 0.86 -1.0
2,837,492 + DvMF_2257 0.89 -2.1
2,837,639 + -0.6
2,837,647 - +0.2
2,837,952 + DvMF_2258 0.11 -1.4
2,838,549 - -0.5
2,838,666 - DvMF_2259 0.17 -0.6
2,838,740 + DvMF_2259 0.26 -1.0
2,838,810 + DvMF_2259 0.35 -1.3
2,838,994 + DvMF_2259 0.57 -1.0
2,839,052 + DvMF_2259 0.64 -1.4
2,839,052 - DvMF_2259 0.64 -1.0
2,839,179 + DvMF_2259 0.79 -0.2
2,839,187 - DvMF_2259 0.80 -0.9
2,839,187 - DvMF_2259 0.80 -1.2
2,839,384 + -0.6

Or see this region's nucleotide sequence