Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2257

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2256 and DvMF_2257 are separated by 325 nucleotidesDvMF_2257 and DvMF_2258 are separated by 205 nucleotidesDvMF_2258 and DvMF_2259 are separated by 137 nucleotides DvMF_2256: DvMF_2256 - transcriptional regulator, MucR family (RefSeq), at 2,835,164 to 2,835,556 _2256 DvMF_2257: DvMF_2257 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,835,882 to 2,837,693 _2257 DvMF_2258: DvMF_2258 - hypothetical protein (RefSeq), at 2,837,899 to 2,838,387 _2258 DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349 _2259 Position (kb) 2835 2836 2837 2838Strain fitness (log2 ratio) -2 -1 0 1at 2835.181 kb on + strandat 2835.269 kb on - strand, within DvMF_2256at 2835.484 kb on - strand, within DvMF_2256at 2835.577 kb on - strandat 2836.118 kb on + strand, within DvMF_2257at 2836.198 kb on + strand, within DvMF_2257at 2836.231 kb on + strand, within DvMF_2257at 2836.547 kb on - strand, within DvMF_2257at 2836.552 kb on - strand, within DvMF_2257at 2836.626 kb on + strand, within DvMF_2257at 2836.897 kb on - strand, within DvMF_2257at 2836.999 kb on - strand, within DvMF_2257at 2837.442 kb on + strand, within DvMF_2257at 2837.492 kb on + strand, within DvMF_2257at 2837.639 kb on + strandat 2837.647 kb on - strandat 2837.952 kb on + strand, within DvMF_2258at 2838.549 kb on - strandat 2838.666 kb on - strand, within DvMF_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,835,181 + -2.4
2,835,269 - DvMF_2256 0.27 -1.8
2,835,484 - DvMF_2256 0.81 -2.7
2,835,577 - -0.9
2,836,118 + DvMF_2257 0.13 -0.5
2,836,198 + DvMF_2257 0.17 -0.6
2,836,231 + DvMF_2257 0.19 -0.3
2,836,547 - DvMF_2257 0.37 -0.7
2,836,552 - DvMF_2257 0.37 -0.7
2,836,626 + DvMF_2257 0.41 -0.7
2,836,897 - DvMF_2257 0.56 -0.7
2,836,999 - DvMF_2257 0.62 -0.3
2,837,442 + DvMF_2257 0.86 -1.0
2,837,492 + DvMF_2257 0.89 -2.1
2,837,639 + -0.6
2,837,647 - +0.2
2,837,952 + DvMF_2258 0.11 -1.4
2,838,549 - -0.5
2,838,666 - DvMF_2259 0.17 -0.6

Or see this region's nucleotide sequence