Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2256

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2254 and DvMF_2255 are separated by 71 nucleotidesDvMF_2255 and DvMF_2256 are separated by 426 nucleotidesDvMF_2256 and DvMF_2257 are separated by 325 nucleotides DvMF_2254: DvMF_2254 - cobyrinic acid a,c-diamide synthase (RefSeq), at 2,832,792 to 2,834,408 _2254 DvMF_2255: DvMF_2255 - hypothetical protein (RefSeq), at 2,834,480 to 2,834,737 _2255 DvMF_2256: DvMF_2256 - transcriptional regulator, MucR family (RefSeq), at 2,835,164 to 2,835,556 _2256 DvMF_2257: DvMF_2257 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,835,882 to 2,837,693 _2257 Position (kb) 2835 2836Strain fitness (log2 ratio) -2 -1 0 1at 2834.437 kb on + strandat 2834.858 kb on + strandat 2835.181 kb on + strandat 2835.269 kb on - strand, within DvMF_2256at 2835.484 kb on - strand, within DvMF_2256at 2835.577 kb on - strandat 2836.118 kb on + strand, within DvMF_2257at 2836.198 kb on + strand, within DvMF_2257at 2836.231 kb on + strand, within DvMF_2257at 2836.547 kb on - strand, within DvMF_2257at 2836.552 kb on - strand, within DvMF_2257

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
2,834,437 + -1.0
2,834,858 + -0.5
2,835,181 + -2.4
2,835,269 - DvMF_2256 0.27 -1.8
2,835,484 - DvMF_2256 0.81 -2.7
2,835,577 - -0.9
2,836,118 + DvMF_2257 0.13 -0.5
2,836,198 + DvMF_2257 0.17 -0.6
2,836,231 + DvMF_2257 0.19 -0.3
2,836,547 - DvMF_2257 0.37 -0.7
2,836,552 - DvMF_2257 0.37 -0.7

Or see this region's nucleotide sequence